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Sample GSM1000567 Query DataSets for GSM1000567
Status Public on Sep 10, 2012
Title CSHL_RnaSeq_Cerebellum_adult-8wks (superseded by GSE90200)
Sample type SRA
 
Source name Cerebellum
Organism Mus musculus
Characteristics lab: CSHL-m
lab description: Gingeras - Cold Spring Harbor Laboratory
datatype: RnaSeq
datatype description: Sequencing analysis of RNA expression
cell: Cerebellum
cell organism: mouse
cell description: Cerebellum
cell sex: U
age: adult-8wks
age description: Adult 8 weeks
age: adult-8wks
age description: Adult 8 weeks
biorep: 20AWC,20BWC
labexpid: LID47036,LID47037
readtype: 2x101D
readtype description: Paired 101 nt directed reads
spikeinpool: Nist14
strain: C57BL/6J
strain description: A substrain of C57BL/6
Biomaterial provider 1)LICR lab; 2)CSHL lab
Growth protocol Cerebellum_Gingeras_protocol.pdf
Extracted molecule polyA RNA
Extraction protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeCshlLongRnaSeq
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2000
 
Description ****************************
GSM1000567 record metadata submitted on Sep 10 2012 may be obsolete, up to date experimental metadata was resubmitted by ENCODE DCC and is available at GSE90200
****************************
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeCshlLongRnaSeq
 
Submission date Sep 10, 2012
Last update date Feb 26, 2020
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL13112
Series (3)
GSE36025 Long RNA-seq from ENCODE/Cold Spring Harbor Lab
GSE49417 The conserved organization of the human and mouse transcriptomes
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
Relations
Reanalyzed by GSE80797
Superseded by GSE90200
Reanalyzed by GSE145930
SRA SRX186046
BioSample SAMN01164136
Named Annotation GSM1000567_mm9_wgEncodeCshlLongRnaSeqCbellumAdult8wksMinusRawRep1.bigWig
Named Annotation GSM1000567_mm9_wgEncodeCshlLongRnaSeqCbellumAdult8wksMinusRawRep2.bigWig
Named Annotation GSM1000567_mm9_wgEncodeCshlLongRnaSeqCbellumAdult8wksPlusRawRep1.bigWig
Named Annotation GSM1000567_mm9_wgEncodeCshlLongRnaSeqCbellumAdult8wksPlusRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM1000567_mm9_wgEncodeCshlLongRnaSeqCbellumAdult8wksContigs.bedRnaElements.gz 13.2 Mb (ftp)(http) BEDRNAELEMENTS
GSM1000567_mm9_wgEncodeCshlLongRnaSeqCbellumAdult8wksJunctions.bedRnaElements.gz 14.3 Mb (ftp)(http) BEDRNAELEMENTS
GSM1000567_mm9_wgEncodeCshlLongRnaSeqCbellumAdult8wksMinusRawRep1.bigWig 310.8 Mb (ftp)(http) BIGWIG
GSM1000567_mm9_wgEncodeCshlLongRnaSeqCbellumAdult8wksMinusRawRep2.bigWig 296.4 Mb (ftp)(http) BIGWIG
GSM1000567_mm9_wgEncodeCshlLongRnaSeqCbellumAdult8wksPlusRawRep1.bigWig 320.5 Mb (ftp)(http) BIGWIG
GSM1000567_mm9_wgEncodeCshlLongRnaSeqCbellumAdult8wksPlusRawRep2.bigWig 305.4 Mb (ftp)(http) BIGWIG
GSM1000567_mm9_wgEncodeCshlLongRnaSeqCbellumAdult8wksSpikeinsRep1.bam 651.2 Mb (ftp)(http) BAM
GSM1000567_mm9_wgEncodeCshlLongRnaSeqCbellumAdult8wksSpikeinsRep2.bam 822.9 Mb (ftp)(http) BAM
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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