|
Status |
Public on Sep 13, 2012 |
Title |
Broad_ChipSeq_A549_H3K9me3_EtOH_0.02pct |
Sample type |
SRA |
|
|
Source name |
A549
|
Organism |
Homo sapiens |
Characteristics |
biomaterial_type: immortalized cell line line: A549 datatype: ChipSeq datatype description: Chromatin IP Sequencing antibody antibodydescription: rabbit polyclonal, ChIP grade. Antibody Target: H3K9me3 antibody targetdescription: Histone H3 (tri methyl K9). Is associated with repressive heterochromatic state (silenced chromatin). NOTE CONTRAST to H3K9me1 which is associated with active and accessible regions. antibody vendorname: abcam antibody vendorid: ab8898 controlid: wgEncodeEH003076 replicate: 1,2 softwareversion: ScriptureVPaperR3 cell sex: M antibody: H3K9me3 antibody antibodydescription: rabbit polyclonal, ChIP grade. Antibody Target: H3K9me3 antibody targetdescription: Histone H3 (tri methyl K9). Is associated with repressive heterochromatic state (silenced chromatin). NOTE CONTRAST to H3K9me1 which is associated with active and accessible regions. antibody vendorname: Abcam antibody vendorid: ab8898 treatment: EtOH_0.02pct treatment description: 1 h with 0.02% Ethanol (Myers) control: std control description: Standard input signal for most experiments. controlid: A549/EtOH_0.02pct/Input/std labversion: Illumina_HiSeq_2000 labversion description: Illumina HiSeq 2000 softwareversion: ScriptureVPaperR3
|
Biomaterial provider |
ATCC
|
Treatment protocol |
EtOH_0.02pct
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
|
|
|
Library strategy |
ChIP-Seq |
Library source |
genomic |
Library selection |
ChIP |
Instrument model |
Illumina HiSeq 2000 |
|
|
Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
|
|
|
Submission date |
Sep 13, 2012 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL11154 |
Series (1) |
GSE29611 |
Histone Modifications by ChIP-seq from ENCODE/Broad Institute |
|
Relations |
SRA |
SRX186650 |
BioSample |
SAMN01174066 |
Named Annotation |
GSM1003454_hg19_wgEncodeBroadHistoneA549H3k09me3Etoh02Sig.bigWig |