 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Sep 13, 2012 |
| Title |
Broad_ChipSeq_H1-hESC_PLU1 |
| Sample type |
SRA |
| |
|
| Source name |
H1-hESC
|
| Organism |
Homo sapiens |
| Characteristics |
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
antibody antibodydescription: Polyclonal Antigen Affinity Purified, Unconjugated, Liquid. Antibody Target: PLU1
antibody targetdescription: JARID1B (Jumonji AT-rich interactive domain 1B) is a member of the JARID 1 family of proteins that catalyze the demethylation of histones on lysine. The Jarid 1 family members include JARID1A, JARID1B, JARID1C and JARID1D. The members of this family possess a Jumonji C (JmjC) and Jumonji N (JmjN) domain as well as one ARID (AT-rich interactive domain) and three PHD-type zinc fingers. As histone demethylases, JARID 1 proteins function as transcriptional repressors. JARID1B expression is largely restricted to testis and may play a critical role in tumorigenesis as it has been found to be upregulated in prostate and breast cancer. Alternative names for JARID1B include retinoblastoma-binding protein 2 homolog 1, RBP2-H1, cancer/testis antigen 31, CT31, PLU-1, PUT1, and KDM5B.
antibody vendorname: YangShi lab
antibody vendorid: PLU1
controlid: wgEncodeEH000088
replicate: 1
softwareversion: ScriptureVPaperR3
cell sex: M
antibody: PLU1
antibody antibodydescription: Polyclonal Antigen Affinity Purified, Unconjugated, Liquid. Antibody Target: PLU1
antibody targetdescription: JARID1B (Jumonji AT-rich interactive domain 1B) is a member of the JARID 1 family of proteins that catalyze the demethylation of histones on lysine. The Jarid 1 family members include JARID1A, JARID1B, JARID1C and JARID1D. The members of this family possess a Jumonji C (JmjC) and Jumonji N (JmjN) domain as well as one ARID (AT-rich interactive domain) and three PHD-type zinc fingers. As histone demethylases, JARID 1 proteins function as transcriptional repressors. JARID1B expression is largely restricted to testis and may play a critical role in tumorigenesis as it has been found to be upregulated in prostate and breast cancer. Alternative names for JARID1B include retinoblastoma-binding protein 2 homolog 1, RBP2-H1, cancer/testis antigen 31, CT31, PLU-1, PUT1, and KDM5B.
antibody vendorname: YangShi lab
antibody vendorid: PLU1
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: H1-hESC/None/Input/std
labversion: Illumina_GA2x
labversion description: Illumina Genome Analyzer IIx
softwareversion: ScriptureVPaperR3
|
| Biomaterial provider |
WiCell Research Institute
|
| Treatment protocol |
None
|
| Growth protocol |
missing
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer IIx |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
|
| |
|
| Submission date |
Sep 13, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL10999 |
| Series (2) |
| GSE29611 |
Histone Modifications by ChIP-seq from ENCODE/Broad Institute |
| GSE51334 |
DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions |
|
| Relations |
| SRA |
SRX186653 |
| BioSample |
SAMN01174069 |
| Named Annotation |
GSM1003457_hg19_wgEncodeBroadHistoneH1hescPlu1Sig.bigWig |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM1003457_hg19_wgEncodeBroadHistoneH1hescPlu1Pk.broadPeak.gz |
240.9 Kb |
(ftp)(http) |
BROADPEAK |
| GSM1003457_hg19_wgEncodeBroadHistoneH1hescPlu1Sig.bigWig |
311.0 Mb |
(ftp)(http) |
BIGWIG |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
|
|
|
|
 |
