|
| Status |
Public on Sep 13, 2012 |
| Title |
Broad_ChipSeq_Dnd41_H3K36me3 |
| Sample type |
SRA |
| |
|
| Source name |
Dnd41
|
| Organism |
Homo sapiens |
| Characteristics |
biomaterial_type: immortalized cell line
line: DND-41
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K36me3
antibody targetdescription: Specific for histone H3 tri methylated at lysine 36, weakly reacts with H3K36me2. Marks regions of RNAPII elongation, including coding and non-coding transcripts.
antibody vendorname: abcam
antibody vendorid: ab9050
controlid: wgEncodeEH002434
replicate: 1,2
softwareversion: ScriptureVPaperR3
cell sex: M
antibody: H3K36me3
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K36me3
antibody targetdescription: Histone H3 (tri-methyl K36). Marks regions of RNAPII elongation, including coding and non-coding transcripts.
antibody vendorname: Abcam
antibody vendorid: ab9050
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: Dnd41/Input/std
softwareversion: ScriptureVPaperR3
|
| Biomaterial provider |
DSMZ
|
| Treatment protocol |
None
|
| Growth protocol |
Dnd41_Bernstein_protocol.pdf
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer IIx |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
|
| |
|
| Submission date |
Sep 13, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL10999 |
| Series (1) |
| GSE29611 |
Histone Modifications by ChIP-seq from ENCODE/Broad Institute |
|
| Relations |
| SRA |
SRX186659 |
| BioSample |
SAMN01174075 |
| Named Annotation |
GSM1003463_hg19_wgEncodeBroadHistoneDnd41H3k36me3Sig.bigWig |
