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Status |
Public on Sep 13, 2012 |
Title |
Broad_ChipSeq_H1-hESC_HDAC2_(A300-705A) |
Sample type |
SRA |
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Source name |
H1-hESC
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Organism |
Homo sapiens |
Characteristics |
datatype: ChipSeq datatype description: Chromatin IP Sequencing antibody antibodydescription: Polyclonal Antigen Affinity Purified, Unconjugated, Liquid. Antibody Target: HDAC2 antibody targetdescription: Histone deacetylase 2 (HDAC2) is a class I histone deacetylase that catalyzes the removal of the acetyl group on lysine residues of the N-terminus of the core histones H2A, H2B, H3, and H4. HDAC2 is a component of multiple deacetylating complexes such as Sin3, NuRD, and CoRest that function to repress gene transcription. Alternate names for HDAC2 include HD2, RPD3, and YAF1. antibody vendorname: Bethyl Laboratories antibody vendorid: A300-705A controlid: wgEncodeEH000088 replicate: 1 softwareversion: ScriptureVPaperR3 cell sex: M antibody: HDAC2_(A300-705A) antibody antibodydescription: Polyclonal Antigen Affinity Purified, Unconjugated, Liquid. Antibody Target: HDAC2 antibody targetdescription: Histone deacetylase 2 (HDAC2) is a class I histone deacetylase that catalyzes the removal of the acetyl group on lysine residues of the N-terminus of the core histones H2A, H2B, H3, and H4. HDAC2 is a component of multiple deacetylating complexes such as Sin3, NuRD, and CoRest that function to repress gene transcription. Alternate names for HDAC2 include HD2, RPD3, and YAF1. antibody vendorname: Bethyl Laboratories antibody vendorid: A300-705A treatment: None treatment description: No special treatment or protocol applies control: std control description: Standard input signal for most experiments. controlid: H1-hESC/None/Input/std labversion: Illumina_GA2x labversion description: Illumina Genome Analyzer IIx softwareversion: ScriptureVPaperR3
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Biomaterial provider |
WiCell Research Institute
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Treatment protocol |
None
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Growth protocol |
missing
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Extracted molecule |
genomic DNA |
Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
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Library strategy |
ChIP-Seq |
Library source |
genomic |
Library selection |
ChIP |
Instrument model |
Illumina Genome Analyzer IIx |
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Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
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Submission date |
Sep 13, 2012 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
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Organization name |
ENCODE DCC
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Street address |
300 Pasteur Dr
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City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
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Platform ID |
GPL10999 |
Series (2) |
GSE29611 |
Histone Modifications by ChIP-seq from ENCODE/Broad Institute |
GSE51334 |
DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions |
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Relations |
SRA |
SRX186668 |
BioSample |
SAMN01174084 |
Named Annotation |
GSM1003472_hg19_wgEncodeBroadHistoneH1hescHdac2a300705aSig.bigWig |
Supplementary file |
Size |
Download |
File type/resource |
GSM1003472_hg19_wgEncodeBroadHistoneH1hescHdac2a300705aPk.broadPeak.gz |
939.7 Kb |
(ftp)(http) |
BROADPEAK |
GSM1003472_hg19_wgEncodeBroadHistoneH1hescHdac2a300705aSig.bigWig |
301.3 Mb |
(ftp)(http) |
BIGWIG |
SRA Run Selector |
Raw data are available in SRA |
Processed data provided as supplementary file |
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