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Sample GSM1003480 Query DataSets for GSM1003480
Status Public on Sep 13, 2012
Title Broad_ChipSeq_HeLa-S3_H3K9me3
Sample type SRA
 
Source name HeLa-S3
Organism Homo sapiens
Characteristics biomaterial_type: immortalized cell line
line: HeLa-S3
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
antibody antibodydescription: rabbit polyclonal, ChIP grade. Antibody Target: H3K9me3
antibody targetdescription: Histone H3 (tri methyl K9). Is associated with repressive heterochromatic state (silenced chromatin). NOTE CONTRAST to H3K9me1 which is associated with active and accessible regions.
antibody vendorname: abcam
antibody vendorid: ab8898
controlid: wgEncodeEH001013
replicate: 1,2
softwareversion: ScriptureVPaperR3
cell sex: F
antibody: H3K9me3
antibody antibodydescription: rabbit polyclonal, ChIP grade. Antibody Target: H3K9me3
antibody targetdescription: Histone H3 (tri methyl K9). Is associated with repressive heterochromatic state (silenced chromatin). NOTE CONTRAST to H3K9me1 which is associated with active and accessible regions.
antibody vendorname: Abcam
antibody vendorid: ab8898
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: HeLa-S3/Input/std
softwareversion: ScriptureVPaperR3
Biomaterial provider ATCC
Treatment protocol None
Growth protocol HeLa-S3_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer IIx
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
 
Submission date Sep 13, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL10999
Series (2)
GSE29611 Histone Modifications by ChIP-seq from ENCODE/Broad Institute
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
SRA SRX186676
BioSample SAMN01174092
Named Annotation GSM1003480_hg19_wgEncodeBroadHistoneHelas3H3k09me3Sig.bigWig

Supplementary file Size Download File type/resource
GSM1003480_hg19_wgEncodeBroadHistoneHelas3H3k09me3Pk.broadPeak.gz 1.1 Mb (ftp)(http) BROADPEAK
GSM1003480_hg19_wgEncodeBroadHistoneHelas3H3k09me3Sig.bigWig 487.8 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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