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Sample GSM1003505 Query DataSets for GSM1003505
Status Public on Sep 13, 2012
Title Broad_ChipSeq_NHDF-Ad_H2A.Z
Sample type SRA
 
Source name NHDF-Ad
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
antibody antibodydescription: Rabbit polyclonal antibody raised against a peptide corresponding to the C-terminus of H2AZ. Antibody Target: H2AZ
antibody targetdescription: H2A.Z is a sequence variant of Histone H2A.
antibody vendorname: Millipore
antibody vendorid: 07-594
controlid: wgEncodeEH001055
replicate: 1,2
softwareversion: ScriptureVPaperR3
cell sex: F
antibody: H2A.Z
antibody antibodydescription: Rabbit polyclonal antibody raised against a peptide corresponding to the C-terminus of H2AZ. Antibody Target: H2AZ
antibody targetdescription: H2A.Z is a sequence variant of Histone H2A.
antibody vendorname: Upstate (Millipore)
antibody vendorid: 07-594
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: NHDF-Ad/None/Input/std
labversion: Illumina_GA2x
labversion description: Illumina Genome Analyzer IIx
softwareversion: ScriptureVPaperR3
Biomaterial provider Lonza
Treatment protocol None
Growth protocol NHDF-Ad_Bernstein_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer IIx
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
 
Submission date Sep 13, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL10999
Series (1)
GSE29611 Histone Modifications by ChIP-seq from ENCODE/Broad Institute
Relations
SRA SRX186701
BioSample SAMN01174117
Named Annotation GSM1003505_hg19_wgEncodeBroadHistoneNhdfadH2azSig.bigWig

Supplementary file Size Download File type/resource
GSM1003505_hg19_wgEncodeBroadHistoneNhdfadH2azPk.broadPeak.gz 2.3 Mb (ftp)(http) BROADPEAK
GSM1003505_hg19_wgEncodeBroadHistoneNhdfadH2azSig.bigWig 464.5 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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