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GEO help: Mouse over screen elements for information. |
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Status |
Public on Sep 13, 2012 |
Title |
Broad_ChipSeq_K562_REST |
Sample type |
SRA |
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Source name |
K562
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Organism |
Homo sapiens |
Characteristics |
datatype: ChipSeq datatype description: Chromatin IP Sequencing antibody antibodydescription: Rabbit Polyclonal Antigen Affinity Purified, Unconjugated, Liquid antibody targetdescription: A transcriptional repressor which represses neuronal genes in non-neuronal tissues. A member of the Kruppel-type zinc finger transcription factor family. Represses transcription by binding a DNA sequence element called the neuron-restrictive silencer element (NRSE) by associating with two corepressors, mSin3 and CoREST, which recruit HDACs to the promoters of REST-regulated genes. Target is GST fusion amino acids 801-1097 of human REST. antibody vendorname: Millipore antibody vendorid: 17-641 controlid: wgEncodeEH000052 replicate: 1 softwareversion: ScriptureVPaperR3 cell sex: F antibody: REST antibody antibodydescription: Rabbit Polyclonal Antigen Affinity Purified, Unconjugated, Liquid antibody targetdescription: A transcriptional repressor which represses neuronal genes in non-neuronal tissues. A member of the Kruppel-type zinc finger transcription factor family. Represses transcription by binding a DNA sequence element called the neuron-restrictive silencer element (NRSE) by associating with two corepressors, mSin3 and CoREST, which recruit HDACs to the promoters of REST-regulated genes. Target is GST fusion amino acids 801-1097 of human REST. antibody vendorname: Millipore antibody vendorid: 17-641 treatment: None treatment description: No special treatment or protocol applies control: std control description: Standard input signal for most experiments. controlid: K562/None/Input/std labversion: Illumina_HiSeq_2000 labversion description: Illumina HiSeq 2000 softwareversion: ScriptureVPaperR3
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Biomaterial provider |
ATCC
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Treatment protocol |
None
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Growth protocol |
K562_protocol.pdf
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Extracted molecule |
genomic DNA |
Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
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Library strategy |
ChIP-Seq |
Library source |
genomic |
Library selection |
ChIP |
Instrument model |
Illumina HiSeq 2000 |
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Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
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Submission date |
Sep 13, 2012 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
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Organization name |
ENCODE DCC
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Street address |
300 Pasteur Dr
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City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
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Platform ID |
GPL11154 |
Series (2) |
GSE29611 |
Histone Modifications by ChIP-seq from ENCODE/Broad Institute |
GSE51334 |
DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions |
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Relations |
SRA |
SRX186703 |
BioSample |
SAMN01174119 |
Named Annotation |
GSM1003507_hg19_wgEncodeBroadHistoneK562RestSig.bigWig |
Supplementary file |
Size |
Download |
File type/resource |
GSM1003507_hg19_wgEncodeBroadHistoneK562RestPk.broadPeak.gz |
219.9 Kb |
(ftp)(http) |
BROADPEAK |
GSM1003507_hg19_wgEncodeBroadHistoneK562RestSig.bigWig |
168.5 Mb |
(ftp)(http) |
BIGWIG |
SRA Run Selector |
Raw data are available in SRA |
Processed data provided as supplementary file |
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