|
| Status |
Public on Sep 13, 2012 |
| Title |
Broad_ChipSeq_H1-hESC_PHF8_(A301-772A) |
| Sample type |
SRA |
| |
|
| Source name |
H1-hESC
|
| Organism |
Homo sapiens |
| Characteristics |
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
antibody antibodydescription: Polyclonal Antigen Affinity Purified, Unconjugated, Liquid. Antibody Target: PHF8
antibody targetdescription: PHF8 (PHD finger protein 8) is a member of the jumonji family of proteins and contains a jumonji C (JmjC) domain. The JmjC proteins are predicted to be metalloenzymes that play a role a chromatin remodeling and histone demethylation. PHF8 also bears a PHD (plant homeodomain)- type zinc-finger, a domain also found to be involved in chromatin remodeling and transcriptional regulation. Truncating mutations in PHF8 are associated with X-linked mental retardation and cleft lip/cleft palate. PHF8 is also known as ZNF422 and KIAA1111.
antibody vendorname: Bethyl Laboratories
antibody vendorid: A301-772A
controlid: wgEncodeEH000088
replicate: 1
softwareversion: ScriptureVPaperR3
cell sex: M
antibody: PHF8_(A301-772A)
antibody antibodydescription: Polyclonal Antigen Affinity Purified, Unconjugated, Liquid. Antibody Target: PHF8
antibody targetdescription: PHF8 (PHD finger protein 8) is a member of the jumonji family of proteins and contains a jumonji C (JmjC) domain. The JmjC proteins are predicted to be metalloenzymes that play a role a chromatin remodeling and histone demethylation. PHF8 also bears a PHD (plant homeodomain)- type zinc-finger, a domain also found to be involved in chromatin remodeling and transcriptional regulation. Truncating mutations in PHF8 are associated with X-linked mental retardation and cleft lip/cleft palate. PHF8 is also known as ZNF422 and KIAA1111.
antibody vendorname: Bethyl Laboratories
antibody vendorid: A301-772A
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: H1-hESC/None/Input/std
labversion: Illumina_GA2x
labversion description: Illumina Genome Analyzer IIx
softwareversion: ScriptureVPaperR3
|
| Biomaterial provider |
WiCell Research Institute
|
| Treatment protocol |
None
|
| Growth protocol |
missing
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer IIx |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
|
| |
|
| Submission date |
Sep 13, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL10999 |
| Series (2) |
| GSE29611 |
Histone Modifications by ChIP-seq from ENCODE/Broad Institute |
| GSE51334 |
DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions |
|
| Relations |
| SRA |
SRX186705 |
| BioSample |
SAMN01174121 |
| Named Annotation |
GSM1003509_hg19_wgEncodeBroadHistoneH1hescPhf8a301772aSig.bigWig |
