|
Status |
Public on Sep 13, 2012 |
Title |
Broad_ChipSeq_NH-A_H4K20me1 |
Sample type |
SRA |
|
|
Source name |
NH-A
|
Organism |
Homo sapiens |
Characteristics |
datatype: ChipSeq datatype description: Chromatin IP Sequencing antibody antibodydescription: rabbit polyclonal. Antibody Target: H4K20me1 antibody targetdescription: Histone H4 (mono-methyl K20). Is associated with active and accessible regions. In mammals, PR-Set7 specifically catalyzes H4K20 monomethylation. NOTE CONTRAST to H3K20me3 which is associated with heterochromatin and DNA repair. antibody vendorname: abcam antibody vendorid: ab9051 controlid: wgEncodeEH001027 replicate: 1,2 softwareversion: ScriptureVPaperR3 cell sex: U antibody: H4K20me1 antibody antibodydescription: rabbit polyclonal. Antibody Target: H4K20me1 antibody targetdescription: Histone H4 (mono-methyl K20). Is associated with active and accessible regions. In mammals, PR-Set7 specifically catalyzes H4K20 monomethylation. NOTE CONTRAST to H3K20me3 which is associated with heterochromatin and DNA repair. antibody vendorname: Abcam antibody vendorid: ab9051 treatment: None treatment description: No special treatment or protocol applies control: std control description: Standard input signal for most experiments. controlid: NH-A/Input/std softwareversion: ScriptureVPaperR3
|
Biomaterial provider |
Lonza
|
Treatment protocol |
None
|
Growth protocol |
NH-A_Stam_protocol.pdf
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
|
|
|
Library strategy |
ChIP-Seq |
Library source |
genomic |
Library selection |
ChIP |
Instrument model |
Illumina Genome Analyzer II |
|
|
Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
|
|
|
Submission date |
Sep 13, 2012 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL9115 |
Series (1) |
GSE29611 |
Histone Modifications by ChIP-seq from ENCODE/Broad Institute |
|
Relations |
SRA |
SRX186721 |
BioSample |
SAMN01174137 |
Named Annotation |
GSM1003525_hg19_wgEncodeBroadHistoneNhaH4k20me1Sig.bigWig |