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Sample GSM1003526 Query DataSets for GSM1003526
Status Public on Sep 13, 2012
Title Broad_ChipSeq_NHDF-Ad_H3K4me1
Sample type SRA
 
Source name NHDF-Ad
Organism Homo sapiens
Characteristics donor_id: ENCDO759UVX
biomaterial_type: primary cell
cell_type: fibroblast of dermis
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K4me1
antibody targetdescription: Histone H3 (mono methyl K4). Is associated with enhancers, and downstream of transcription starts.
antibody vendorname: abcam
antibody vendorid: ab8895
controlid: wgEncodeEH001055
replicate: 1,2
softwareversion: ScriptureVPaperR3
cell sex: F
antibody: H3K4me1
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K4me1
antibody targetdescription: Histone H3 (mono methyl K4). Is associated with enhancers, and downstream of transcription starts.
antibody vendorname: Abcam
antibody vendorid: ab8895
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: NHDF-Ad/Input/std
softwareversion: ScriptureVPaperR3
Biomaterial provider Lonza
Treatment protocol None
Growth protocol NHDF-Ad_Bernstein_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer IIx
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
 
Submission date Sep 13, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL10999
Series (1)
GSE29611 Histone Modifications by ChIP-seq from ENCODE/Broad Institute
Relations
Reanalyzed by GSE90454
SRA SRX186722
BioSample SAMN01174138
Named Annotation GSM1003526_hg19_wgEncodeBroadHistoneNhdfadH3k04me1Sig.bigWig

Supplementary file Size Download File type/resource
GSM1003526_hg19_wgEncodeBroadHistoneNhdfadH3k04me1Pk.broadPeak.gz 2.5 Mb (ftp)(http) BROADPEAK
GSM1003526_hg19_wgEncodeBroadHistoneNhdfadH3k04me1Sig.bigWig 446.4 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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