 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Sep 14, 2012 |
| Title |
Broad_ChipSeq_NH-A_H3K9ac |
| Sample type |
SRA |
| |
|
| Source name |
NH-A
|
| Organism |
Homo sapiens |
| Characteristics |
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K9ac
antibody targetdescription: Histone H3 (acetyl K9). As with H3K27ac, associated with transcriptional initiation and open chromatin structure. It remains unknown whether acetylation can have different consequences depending on the specific lysine residue targeted. In general, though, there appears to be high redundancy. Histone acetylation is notable for susceptibility to small molecules and drugs that target histone deacetylases.
antibody vendorname: abcam
antibody vendorid: ab4441
controlid: wgEncodeEH001027
replicate: 1,2
softwareversion: ScriptureVPaperR3
cell sex: U
antibody: H3K9ac
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K9ac
antibody targetdescription: Histone H3 (acetyl K9). As with H3K27ac, associated with transcriptional initiation and open chromatin structure. It remains unknown whether acetylation can have different consequences depending on the specific lysine residue targeted. In general, though, there appears to be high redundancy. Histone acetylation is notable for susceptibility to small molecules and drugs that target histone deacetylases.
antibody vendorname: Abcam
antibody vendorid: ab4441
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: NH-A/Input/std
softwareversion: ScriptureVPaperR3
|
| Biomaterial provider |
Lonza
|
| Treatment protocol |
None
|
| Growth protocol |
NH-A_Stam_protocol.pdf
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
|
| |
|
| Submission date |
Sep 13, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL11154 |
| Series (1) |
| GSE29611 |
Histone Modifications by ChIP-seq from ENCODE/Broad Institute |
|
| Relations |
| SRA |
SRX186730 |
| BioSample |
SAMN01174146 |
| Named Annotation |
GSM1003534_hg19_wgEncodeBroadHistoneNhaH3k09acSig.bigWig |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM1003534_hg19_wgEncodeBroadHistoneNhaH3k09acPk.broadPeak.gz |
1.3 Mb |
(ftp)(http) |
BROADPEAK |
| GSM1003534_hg19_wgEncodeBroadHistoneNhaH3k09acSig.bigWig |
474.8 Mb |
(ftp)(http) |
BIGWIG |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
|
|
|
|
 |
