|
| Status |
Public on Sep 13, 2012 |
| Title |
Broad_ChipSeq_A549_H3K4me3_DEX_100nM |
| Sample type |
SRA |
| |
|
| Source name |
A549
|
| Organism |
Homo sapiens |
| Characteristics |
biomaterial_type: immortalized cell line
line: A549
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K4me3
antibody targetdescription: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname: 1)abcam; 2)Millipore
antibody vendorid: ab8580; 07-473
controlid: wgEncodeEH003075
replicate: 1,2
softwareversion: ScriptureVPaperR3
cell sex: M
antibody: H3K4me3
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K4me3
antibody targetdescription: Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname: Millipore
antibody vendorid: 07-473
treatment: DEX_100nM
treatment description: 1 h with 100 nM Dexamethasone (Myers)
control: std
control description: Standard input signal for most experiments.
controlid: A549/DEX_100nM/Input/std
labversion: Illumina_HiSeq_2000
labversion description: Illumina HiSeq 2000
softwareversion: ScriptureVPaperR3
|
| Biomaterial provider |
ATCC
|
| Treatment protocol |
DEX_100nM
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
|
| |
|
| Submission date |
Sep 13, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL11154 |
| Series (1) |
| GSE29611 |
Histone Modifications by ChIP-seq from ENCODE/Broad Institute |
|
| Relations |
| SRA |
SRX186738 |
| BioSample |
SAMN01174154 |
| Named Annotation |
GSM1003542_hg19_wgEncodeBroadHistoneA549H3k04me3Dex100nmSig.bigWig |
