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Sample GSM1003584 Query DataSets for GSM1003584
Status Public on Sep 13, 2012
Title Broad_ChipSeq_H1-hESC_RBBP5_(A300-109A)
Sample type SRA
 
Source name H1-hESC
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
antibody antibodydescription: Polyclonal Antigen Affinity Purified, Unconjugated, Liquid. Antibody Target: RBBP5
antibody targetdescription: Retinoblastoma binding protein 5 (RbBP5) is a subunit of a human Set1-like histone methyltransferase (HMT) complex. The Set-1 like complexes are responsible for mono-, di-, and tri-methylation of histone H3 K4. RbBP5 associates with a multitude of proteins in a number of Set1-like complexes which include various combinations of MLL, MLL2, MLL3, MLL4, ASH2L,WDR5, hDPY-30, hSwd2, CXXC1, HCF1, Menin, PTIP, PA1, NCOA6, and UTX. RbBP5 is also one of many proteins that bind the Retinoblastoma tumor suppressor protein, pRb. Alternate names for RbBP5 are RBQ3 and SWD1.
antibody vendorname: Bethyl Laboratories
antibody vendorid: A300-109A
controlid: wgEncodeEH000088
replicate: 1,2
softwareversion: ScriptureVPaperR3
cell sex: M
antibody: RBBP5_(A300-109A)
antibody antibodydescription: Polyclonal Antigen Affinity Purified, Unconjugated, Liquid. Antibody Target: RBBP5
antibody targetdescription: Retinoblastoma binding protein 5 (RbBP5) is a subunit of a human Set1-like histone methyltransferase (HMT) complex. The Set-1 like complexes are responsible for mono-, di-, and tri-methylation of histone H3 K4. RbBP5 associates with a multitude of proteins in a number of Set1-like complexes which include various combinations of MLL, MLL2, MLL3, MLL4, ASH2L,WDR5, hDPY-30, hSwd2, CXXC1, HCF1, Menin, PTIP, PA1, NCOA6, and UTX. RbBP5 is also one of many proteins that bind the Retinoblastoma tumor suppressor protein, pRb. Alternate names for RbBP5 are RBQ3 and SWD1.
antibody vendorname: Bethyl Laboratories
antibody vendorid: A300-109A
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: H1-hESC/Input/std
softwareversion: ScriptureVPaperR3
Biomaterial provider WiCell Research Institute
Treatment protocol None
Growth protocol missing
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer IIx
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
 
Submission date Sep 13, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL10999
Series (2)
GSE29611 Histone Modifications by ChIP-seq from ENCODE/Broad Institute
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
SRA SRX186780
BioSample SAMN01174196
Named Annotation GSM1003584_hg19_wgEncodeBroadHistoneH1hescRbbp5a300109aStdSig.bigWig

Supplementary file Size Download File type/resource
GSM1003584_hg19_wgEncodeBroadHistoneH1hescRbbp5a300109aStdPk.broadPeak.gz 2.4 Mb (ftp)(http) BROADPEAK
GSM1003584_hg19_wgEncodeBroadHistoneH1hescRbbp5a300109aStdSig.bigWig 464.9 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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