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GEO help: Mouse over screen elements for information. |
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Status |
Public on Sep 13, 2012 |
Title |
Broad_ChipSeq_K562_PLU1 |
Sample type |
SRA |
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Source name |
K562
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Organism |
Homo sapiens |
Characteristics |
datatype: ChipSeq datatype description: Chromatin IP Sequencing antibody antibodydescription: Polyclonal Antigen Affinity Purified, Unconjugated, Liquid. Antibody Target: PLU1 antibody targetdescription: JARID1B (Jumonji AT-rich interactive domain 1B) is a member of the JARID 1 family of proteins that catalyze the demethylation of histones on lysine. The Jarid 1 family members include JARID1A, JARID1B, JARID1C and JARID1D. The members of this family possess a Jumonji C (JmjC) and Jumonji N (JmjN) domain as well as one ARID (AT-rich interactive domain) and three PHD-type zinc fingers. As histone demethylases, JARID 1 proteins function as transcriptional repressors. JARID1B expression is largely restricted to testis and may play a critical role in tumorigenesis as it has been found to be upregulated in prostate and breast cancer. Alternative names for JARID1B include retinoblastoma-binding protein 2 homolog 1, RBP2-H1, cancer/testis antigen 31, CT31, PLU-1, PUT1, and KDM5B. antibody vendorname: YangShi lab antibody vendorid: PLU1 controlid: wgEncodeEH000052 replicate: 1,2 softwareversion: ScriptureVPaperR3 cell sex: F antibody: PLU1 antibody antibodydescription: Polyclonal Antigen Affinity Purified, Unconjugated, Liquid. Antibody Target: PLU1 antibody targetdescription: JARID1B (Jumonji AT-rich interactive domain 1B) is a member of the JARID 1 family of proteins that catalyze the demethylation of histones on lysine. The Jarid 1 family members include JARID1A, JARID1B, JARID1C and JARID1D. The members of this family possess a Jumonji C (JmjC) and Jumonji N (JmjN) domain as well as one ARID (AT-rich interactive domain) and three PHD-type zinc fingers. As histone demethylases, JARID 1 proteins function as transcriptional repressors. JARID1B expression is largely restricted to testis and may play a critical role in tumorigenesis as it has been found to be upregulated in prostate and breast cancer. Alternative names for JARID1B include retinoblastoma-binding protein 2 homolog 1, RBP2-H1, cancer/testis antigen 31, CT31, PLU-1, PUT1, and KDM5B. antibody vendorname: YangShi lab antibody vendorid: PLU1 treatment: None treatment description: No special treatment or protocol applies control: std control description: Standard input signal for most experiments. controlid: K562/Input/std softwareversion: ScriptureVPaperR3
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Biomaterial provider |
ATCC
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Treatment protocol |
None
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Growth protocol |
K562_protocol.pdf
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Extracted molecule |
genomic DNA |
Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
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Library strategy |
ChIP-Seq |
Library source |
genomic |
Library selection |
ChIP |
Instrument model |
Illumina Genome Analyzer IIx |
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Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
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Submission date |
Sep 13, 2012 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
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Organization name |
ENCODE DCC
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Street address |
300 Pasteur Dr
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City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
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Platform ID |
GPL10999 |
Series (2) |
GSE29611 |
Histone Modifications by ChIP-seq from ENCODE/Broad Institute |
GSE51334 |
DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions |
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Relations |
SRA |
SRX186782 |
BioSample |
SAMN01174198 |
Named Annotation |
GSM1003586_hg19_wgEncodeBroadHistoneK562Plu1StdSig.bigWig |
Supplementary file |
Size |
Download |
File type/resource |
GSM1003586_hg19_wgEncodeBroadHistoneK562Plu1StdPk.broadPeak.gz |
2.0 Mb |
(ftp)(http) |
BROADPEAK |
GSM1003586_hg19_wgEncodeBroadHistoneK562Plu1StdSig.bigWig |
420.5 Mb |
(ftp)(http) |
BIGWIG |
SRA Run Selector |
Raw data are available in SRA |
Processed data provided as supplementary file |
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