|
Status |
Public on Sep 14, 2012 |
Title |
Stanford_ChipSeq_CH12_UBF_(sc-13125)_IgG-rab |
Sample type |
SRA |
|
|
Source name |
CH12
|
Organism |
Mus musculus |
Characteristics |
lab: Stanford-m lab description: Snyder - Stanford University datatype: ChipSeq datatype description: Chromatin IP Sequencing cell: CH12 cell organism: mouse cell description: B-cell lymphoma (GM12878 analog) cell sex: F antibody: UBF_(sc-13125) antibody antibodydescription: UBF (F-9) is a mouse monoclonal antibody raised against amino acids 1-220 of UBF of human origin. Antibody Target: UBF antibody targetdescription: Upstream binding factor (UBF) is a transcription factor required for expression of the 18S, 5.8S, and 28S ribosomal RNAs, along with SL1 (a complex of TBP (MIM 600075) and multiple TBP-associated factors or 'TAFs'). Two UBF polypeptides, of 94 and 97 kD, exist in the human (Bell et al., 1988 (PubMed 3413483)). UBF is a nucleolar phosphoprotein with both DNA binding and transactivation domains. Sequence-specific DNA binding to the core and upstream control elements of the human rRNA promoter is mediated through several HMG boxes antibody vendorname: Santa Cruz Biotech antibody vendorid: sc-13125 treatment: None treatment description: No special treatment or protocol applies control: IgG-rab control description: Input signal from Normal Rabbit IgG ChIP-seq. age: immortalized age description: Immortal cells control: IgG-rab control description: Input signal from Normal Rabbit IgG ChIP-seq. controlid: wgEncodeEM001939 labversion: PeakSeq1.0 strain: B10.H-2aH-4bp/Wts strain description: Derived by inbreeding from selected F2 progeny of B10.A X B10.129
|
Biomaterial provider |
Weissman lab
|
Treatment protocol |
None
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeSydhTfbs
|
|
|
Library strategy |
ChIP-Seq |
Library source |
genomic |
Library selection |
ChIP |
Instrument model |
Illumina Genome Analyzer |
|
|
Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeSydhTfbs
|
|
|
Submission date |
Sep 13, 2012 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL9185 |
Series (3) |
GSE36030 |
Transcription Factor Binding Sites by ChIP-seq from ENCODE/Stanford/Yale |
GSE49847 |
A comparative encyclopedia of DNA elements in the mouse genome |
GSE51334 |
DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions |
|
Relations |
SRA |
SRX188803 |
BioSample |
SAMN01179565 |
Named Annotation |
GSM1003783_mm9_wgEncodeSydhTfbsCh12Ubfsc13125IggrabSig.bigWig |