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Sample GSM1006902 Query DataSets for GSM1006902
Status Public on Sep 20, 2012
Title GIS_RnaPet_A549_cell_longPolyA
Sample type SRA
 
Source name A549
Organism Homo sapiens
Characteristics datatype: RnaPet
datatype description: RNA Paired-End Tags
rnaextract: longPolyA
rnaextract description: Poly(A)+ RNA longer than 200 nt
biorep: 087WC,088WC,087WC,088WC
labexpid: RHA010,RHA009,RHA009,RHA010
labversion: clone-free
readtype: 2x36
readtype description: Paired 36 nt reads
replicate: 3,4
localization: cell
localization description: Whole cell
rnaextract: longPolyA
rnaextract description: Poly(A)+ RNA longer than 200 nt
biorep: 087WC,088WC
labexpid: RHA009,RHA010
labversion: clone-free
readtype: 2x36
readtype description: Paired 36 nt reads
Biomaterial provider ATCC
Extracted molecule polyA RNA
Extraction protocol For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeGisRnaPet
 
Library strategy OTHER
Library source transcriptomic
Library selection other
Instrument model Illumina HiSeq 2000
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeGisRnaPet
 
Submission date Sep 20, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL11154
Series (1)
GSE33600 RNA Subcellular Localization by Paired End diTag Sequencing from ENCODE/GIS
Relations
SRA SRX188973
BioSample SAMN01180322
Named Annotation GSM1006902_hg19_wgEncodeGisRnaPetA549CellPapMinusRawRep3.bigWig
Named Annotation GSM1006902_hg19_wgEncodeGisRnaPetA549CellPapMinusRawRep4.bigWig
Named Annotation GSM1006902_hg19_wgEncodeGisRnaPetA549CellPapPlusRawRep3.bigWig
Named Annotation GSM1006902_hg19_wgEncodeGisRnaPetA549CellPapPlusRawRep4.bigWig

Supplementary file Size Download File type/resource
GSM1006902_hg19_wgEncodeGisRnaPetA549CellPapClusters.bed.gz 5.2 Mb (ftp)(http) BED
GSM1006902_hg19_wgEncodeGisRnaPetA549CellPapMinusRawRep3.bigWig 24.5 Mb (ftp)(http) BIGWIG
GSM1006902_hg19_wgEncodeGisRnaPetA549CellPapMinusRawRep4.bigWig 20.8 Mb (ftp)(http) BIGWIG
GSM1006902_hg19_wgEncodeGisRnaPetA549CellPapPlusRawRep3.bigWig 24.5 Mb (ftp)(http) BIGWIG
GSM1006902_hg19_wgEncodeGisRnaPetA549CellPapPlusRawRep4.bigWig 20.8 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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