|
Status |
Public on Sep 20, 2012 |
Title |
GIS_RnaPet_MCF-7_nucleus_longPolyA |
Sample type |
SRA |
|
|
Source name |
MCF-7
|
Organism |
Homo sapiens |
Characteristics |
datatype: RnaPet datatype description: RNA Paired-End Tags rnaextract: longPolyA rnaextract description: Poly(A)+ RNA longer than 200 nt biorep: 089N,090N,089N,090N labexpid: RHM054,RHM054,RHM055,RHM055 labversion: clone-free readtype: 2x36 readtype description: Paired 36 nt reads replicate: 3,4 localization: nucleus localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA rnaextract: longPolyA rnaextract description: Poly(A)+ RNA longer than 200 nt biorep: 089N,090N labexpid: RHM054,RHM055 labversion: clone-free readtype: 2x36 readtype description: Paired 36 nt reads
|
Biomaterial provider |
ATCC
|
Extracted molecule |
polyA RNA |
Extraction protocol |
For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeGisRnaPet
|
|
|
Library strategy |
OTHER |
Library source |
transcriptomic |
Library selection |
other |
Instrument model |
Illumina HiSeq 2000 |
|
|
Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeGisRnaPet
|
|
|
Submission date |
Sep 20, 2012 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL11154 |
Series (1) |
GSE33600 |
RNA Subcellular Localization by Paired End diTag Sequencing from ENCODE/GIS |
|
Relations |
SRA |
SRX188983 |
BioSample |
SAMN01180332 |
Named Annotation |
GSM1006912_hg19_wgEncodeGisRnaPetMcf7NucleusPapMinusRawRep3.bigWig |
Named Annotation |
GSM1006912_hg19_wgEncodeGisRnaPetMcf7NucleusPapMinusRawRep4.bigWig |
Named Annotation |
GSM1006912_hg19_wgEncodeGisRnaPetMcf7NucleusPapPlusRawRep3.bigWig |
Named Annotation |
GSM1006912_hg19_wgEncodeGisRnaPetMcf7NucleusPapPlusRawRep4.bigWig |