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GEO accession:
Sample GSM1006915
Query DataSets for GSM1006915
Status
Public on Sep 20, 2012
Title
GIS_RnaPet_HUVEC_cytosol_longPolyA
Sample type
SRA
Source name
HUVEC
Organism
Homo sapiens
Characteristics
datatype: RnaPet
datatype description: RNA Paired-End Tags
rnaextract: longPolyA
rnaextract description: Poly(A)+ RNA longer than 200 nt
biorep: gen0117C
labexpid: RHH003
labversion: clone-free
readtype: 2x36
readtype description: Paired 36 nt reads
cell sex: U
localization: cytosol
localization description: The fluid between the cells outer membrane and the nucleus
rnaextract: longPolyA
rnaextract description: Poly(A)+ RNA longer than 200 nt
biorep: gen0117C
labexpid: RHH003
labversion: clone-free
readtype: 2x36
readtype description: Paired 36 nt reads
replicate: 1
Biomaterial provider
Lonza
Growth protocol
HUVEC_protocol.pdf
Extracted molecule
polyA RNA
Extraction protocol
For more information, see
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeGisRnaPet
Library strategy
OTHER
Library source
transcriptomic
Library selection
other
Instrument model
Illumina Genome Analyzer IIx
Data processing
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeGisRnaPet
Submission date
Sep 20, 2012
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL10999
Series (1)
GSE33600
RNA Subcellular Localization by Paired End diTag Sequencing from ENCODE/GIS
Relations
SRA
SRX188986
BioSample
SAMN01180335
Named Annotation
GSM1006915_hg19_wgEncodeGisRnaPetHuvecCytosolPapMinusRawRep1V2.bigWig
Named Annotation
GSM1006915_hg19_wgEncodeGisRnaPetHuvecCytosolPapPlusRawRep1V2.bigWig
Supplementary file
Size
Download
File type/resource
GSM1006915_hg19_wgEncodeGisRnaPetHuvecCytosolPapClustersRep1V2.bed.gz
9.2 Mb
(ftp)
(http)
BED
GSM1006915_hg19_wgEncodeGisRnaPetHuvecCytosolPapMinusRawRep1V2.bigWig
19.6 Mb
(ftp)
(http)
BIGWIG
GSM1006915_hg19_wgEncodeGisRnaPetHuvecCytosolPapPlusRawRep1V2.bigWig
19.6 Mb
(ftp)
(http)
BIGWIG
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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