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GEO accession:
Sample GSM1009528
Query DataSets for GSM1009528
Status
Public on Sep 26, 2012
Title
GIS_RnaPet_GM12878_cytosol_longPolyA
Sample type
SRA
Source name
GM12878
Organism
Homo sapiens
Characteristics
lab: GIS
lab description: Ruan - Genome Institute of Singapore
datatype: RnaPet
datatype description: RNA Paired-End Tag
cell: GM12878
cell organism: human
cell description: lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus
cell karyotype: normal
cell lineage: mesoderm
cell sex: F
localization: cytosol
localization description: The fluid between the cells outer membrane and the nucleus
rnaextract: longPolyA
rnaextract description: Poly(A)+ RNA longer than 200 nt
biorep: gen0107C
labexpid: IHG024
labversion: clone-free
replicate: 1
replicate description: tier 1
Biomaterial provider
Coriell;
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878
Growth protocol
GM12878_protocol.pdf
Extracted molecule
polyA RNA
Extraction protocol
For more information, see
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeGisRnaPet
Library strategy
RNA-Seq
Library source
transcriptomic
Library selection
cDNA
Instrument model
Illumina Genome Analyzer II
Data processing
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeGisRnaPet
Submission date
Sep 26, 2012
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL9115
Series (1)
GSE33600
RNA Subcellular Localization by Paired End diTag Sequencing from ENCODE/GIS
Relations
SRA
SRX189691
BioSample
SAMN01730982
Named Annotation
GSM1009528_hg19_wgEncodeGisRnaPetGm12878CytosolPapMinusRawRep1V2.bigWig
Named Annotation
GSM1009528_hg19_wgEncodeGisRnaPetGm12878CytosolPapPlusRawRep1V2.bigWig
Supplementary file
Size
Download
File type/resource
GSM1009528_hg19_wgEncodeGisRnaPetGm12878CytosolPapClustersRep1V2.bed.gz
7.5 Mb
(ftp)
(http)
BED
GSM1009528_hg19_wgEncodeGisRnaPetGm12878CytosolPapMinusRawRep1V2.bigWig
13.7 Mb
(ftp)
(http)
BIGWIG
GSM1009528_hg19_wgEncodeGisRnaPetGm12878CytosolPapPlusRawRep1V2.bigWig
13.8 Mb
(ftp)
(http)
BIGWIG
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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