|
| Status |
Public on Feb 01, 2013 |
| Title |
blood draw 1 from healthy human donor 4 processed by IgG CTC chip |
| Sample type |
SRA |
| |
|
| Source name |
blood
|
| Organism |
Homo sapiens |
| Characteristics |
donor: healthy human donor 4
tissue: blood
blood draw: 1
blood processed by: IgG CTC chip
|
| Extracted molecule |
total RNA |
| Extraction protocol |
CTC capture using microfluidic chip.
Qiagen RNeasy MinElute kit followed by Helicos single molecule sequencing: Pubmed ID 18388294, 20133332
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Helicos HeliScope |
| |
|
| Description |
Sample ID: row9.IgG
mRNA
Helicos Digital Gene Expression pipeline. See pubmed ID 19581875
|
| Data processing |
Helicos Digital Gene Expression pipeline. Pubmed ID 19581875
Genome_build: hg18
Supplementary_files_format_and_content: The processed_data.txt file is a tab-delimited text file of aligned read counts. Rownames are UCSC knownGene transcript IDs or gene symbols, column names are sample IDs. The processed_data.txt file is linked to the Series record as a supplementary file.
|
| |
|
| Submission date |
Oct 01, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
Ben S. Wittner |
| E-mail(s) |
wittner.ben@mgh.harvard.edu
|
| Organization name |
Massachusetts General Hospital
|
| Department |
Center for Cancer Research
|
| Lab |
Lawrence
|
| Street address |
149 13th Street
|
| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02129 |
| Country |
USA |
| |
|
| Platform ID |
GPL14761 |
| Series (1) |
| GSE41245 |
Circulating Breast Tumor Cells Exhibit Dynamic Changes in Epithelial and Mesenchymal Cell Composition |
|
| Relations |
| SRA |
SRX190443 |
| BioSample |
SAMN01737255 |
