|
Status |
Public on Oct 03, 2012 |
Title |
UW_DnaseSeq_WholeBrain_adult-8wks_C57BL/6 |
Sample type |
SRA |
|
|
Source name |
WholeBrain
|
Organism |
Mus musculus |
Characteristics |
lab: UW-m lab description: Stamatoyannopoulous - University of Washington datatype: DnaseSeq datatype description: DNaseI HS Sequencing cell: WholeBrain cell organism: mouse cell description: Whole Brain cell sex: M age: adult-8wks age description: Adult 8 weeks strain: C57BL/6 strain description: C57 black 6, the most common inbred strain of laboratory mouse age: adult-8wks age description: Adult 8 weeks labversion: 1,Hotspot-v5.1,lmax-v1.0,lmax-v1.1,WindowDensity-bin20-win+/-75 replicate: 1,3,2,5,4,7,6 strain description: C57 black 6, the most common inbred strain of laboratory mouse
|
Biomaterial provider |
1)Stam lab; 2)CSHL lab
|
Growth protocol |
Tissue_Stam_protocol.pdf
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwDnase
|
|
|
Library strategy |
DNase-Hypersensitivity |
Library source |
genomic |
Library selection |
DNAse |
Instrument model |
Illumina Genome Analyzer |
|
|
Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwDnase
|
|
|
Submission date |
Oct 03, 2012 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL9185 |
Series (3) |
GSE37074 |
DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington |
GSE49847 |
A comparative encyclopedia of DNA elements in the mouse genome |
GSE51336 |
Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution |
|
Relations |
SRA |
SRX191009 |
BioSample |
SAMN01757919 |
Named Annotation |
GSM1014151_mm9_wgEncodeUwDnaseWbrainC57bl6MAdult8wksSigRep1.bigWig |
Named Annotation |
GSM1014151_mm9_wgEncodeUwDnaseWbrainC57bl6MAdult8wksSigRep2.bigWig |
Named Annotation |
GSM1014151_mm9_wgEncodeUwDnaseWbrainC57bl6MAdult8wksSigRep3.bigWig |
Named Annotation |
GSM1014151_mm9_wgEncodeUwDnaseWbrainC57bl6MAdult8wksSigRep4.bigWig |
Named Annotation |
GSM1014151_mm9_wgEncodeUwDnaseWbrainC57bl6MAdult8wksSigRep5.bigWig |
Named Annotation |
GSM1014151_mm9_wgEncodeUwDnaseWbrainC57bl6MAdult8wksSigRep6.bigWig |
Named Annotation |
GSM1014151_mm9_wgEncodeUwDnaseWbrainC57bl6MAdult8wksSigRep7.bigWig |
Supplementary file |
Size |
Download |
File type/resource |
GSM1014151_mm9_wgEncodeUwDnaseWbrainC57bl6MAdult8wksHotspotsRep1.broadPeak.gz |
3.8 Mb |
(ftp)(http) |
BROADPEAK |
GSM1014151_mm9_wgEncodeUwDnaseWbrainC57bl6MAdult8wksHotspotsRep2.broadPeak.gz |
3.9 Mb |
(ftp)(http) |
BROADPEAK |
GSM1014151_mm9_wgEncodeUwDnaseWbrainC57bl6MAdult8wksHotspotsRep3.broadPeak.gz |
4.0 Mb |
(ftp)(http) |
BROADPEAK |
GSM1014151_mm9_wgEncodeUwDnaseWbrainC57bl6MAdult8wksHotspotsRep4.broadPeak.gz |
3.9 Mb |
(ftp)(http) |
BROADPEAK |
GSM1014151_mm9_wgEncodeUwDnaseWbrainC57bl6MAdult8wksHotspotsRep5.broadPeak.gz |
5.6 Mb |
(ftp)(http) |
BROADPEAK |
GSM1014151_mm9_wgEncodeUwDnaseWbrainC57bl6MAdult8wksHotspotsRep6.broadPeak.gz |
4.6 Mb |
(ftp)(http) |
BROADPEAK |
GSM1014151_mm9_wgEncodeUwDnaseWbrainC57bl6MAdult8wksHotspotsRep7.broadPeak.gz |
4.9 Mb |
(ftp)(http) |
BROADPEAK |
GSM1014151_mm9_wgEncodeUwDnaseWbrainC57bl6MAdult8wksPkRep1.narrowPeak.gz |
2.5 Mb |
(ftp)(http) |
NARROWPEAK |
GSM1014151_mm9_wgEncodeUwDnaseWbrainC57bl6MAdult8wksPkRep2.narrowPeak.gz |
2.5 Mb |
(ftp)(http) |
NARROWPEAK |
GSM1014151_mm9_wgEncodeUwDnaseWbrainC57bl6MAdult8wksPkRep3.narrowPeak.gz |
2.4 Mb |
(ftp)(http) |
NARROWPEAK |
GSM1014151_mm9_wgEncodeUwDnaseWbrainC57bl6MAdult8wksPkRep4.narrowPeak.gz |
2.3 Mb |
(ftp)(http) |
NARROWPEAK |
GSM1014151_mm9_wgEncodeUwDnaseWbrainC57bl6MAdult8wksPkRep5.narrowPeak.gz |
2.5 Mb |
(ftp)(http) |
NARROWPEAK |
GSM1014151_mm9_wgEncodeUwDnaseWbrainC57bl6MAdult8wksPkRep6.narrowPeak.gz |
1.9 Mb |
(ftp)(http) |
NARROWPEAK |
GSM1014151_mm9_wgEncodeUwDnaseWbrainC57bl6MAdult8wksPkRep7.narrowPeak.gz |
2.5 Mb |
(ftp)(http) |
NARROWPEAK |
GSM1014151_mm9_wgEncodeUwDnaseWbrainC57bl6MAdult8wksSigRep1.bigWig |
135.0 Mb |
(ftp)(http) |
BIGWIG |
GSM1014151_mm9_wgEncodeUwDnaseWbrainC57bl6MAdult8wksSigRep2.bigWig |
154.7 Mb |
(ftp)(http) |
BIGWIG |
GSM1014151_mm9_wgEncodeUwDnaseWbrainC57bl6MAdult8wksSigRep3.bigWig |
162.4 Mb |
(ftp)(http) |
BIGWIG |
GSM1014151_mm9_wgEncodeUwDnaseWbrainC57bl6MAdult8wksSigRep4.bigWig |
146.7 Mb |
(ftp)(http) |
BIGWIG |
GSM1014151_mm9_wgEncodeUwDnaseWbrainC57bl6MAdult8wksSigRep5.bigWig |
231.7 Mb |
(ftp)(http) |
BIGWIG |
GSM1014151_mm9_wgEncodeUwDnaseWbrainC57bl6MAdult8wksSigRep6.bigWig |
150.9 Mb |
(ftp)(http) |
BIGWIG |
GSM1014151_mm9_wgEncodeUwDnaseWbrainC57bl6MAdult8wksSigRep7.bigWig |
169.3 Mb |
(ftp)(http) |
BIGWIG |
SRA Run Selector |
Raw data are available in SRA |
Processed data provided as supplementary file |