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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Oct 03, 2012 |
| Title |
UW_DnaseSeq_EPC_(CD117+,CD71+,TER119-)_E14.5_CD-1 |
| Sample type |
SRA |
| |
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| Source name |
EPC_(CD117+,CD71+,TER119-)
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| Organism |
Mus musculus |
| Characteristics |
lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: EPC_(CD117+,CD71+,TER119-)
cell organism: mouse
cell description: liver fraction CD117+,CD71+,TER119-
cell sex: M
age: E14.5
age description: Embryonic day 14.5
strain: CD-1
strain description: Multipurpose mouse used for safety testing, aging studies, surgical models and pseudopregnancy.
age: E14.5
age description: Embryonic day 14.5
labexpid: DS20994
labversion: 1,Hotspot-v5.2,lmax-v1.1,WindowDensity-bin20-win+/-75
replicate: 1
strain description: Multipurpose mouse used for safety testing, aging studies, surgical models and pseudopregnancy.
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| Biomaterial provider |
M. Bender, R. Byron (Fred Hutchinson Cancer Research Center)
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| Extracted molecule |
genomic DNA |
| Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwDnase
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| Library strategy |
DNase-Hypersensitivity |
| Library source |
genomic |
| Library selection |
DNAse |
| Instrument model |
Illumina Genome Analyzer |
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| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwDnase
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| Submission date |
Oct 03, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
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| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL9185 |
| Series (3) |
| GSE37074 |
DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington |
| GSE49847 |
A comparative encyclopedia of DNA elements in the mouse genome |
| GSE51336 |
Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution |
|
| Relations |
| SRA |
SRX191016 |
| BioSample |
SAMN01757926 |
| Named Annotation |
GSM1014158_mm9_wgEncodeUwDnaseEpcppmCd1ME14halfSigRep1.bigWig |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM1014158_mm9_wgEncodeUwDnaseEpcppmCd1ME14halfHotspotsRep1.broadPeak.gz |
2.8 Mb |
(ftp)(http) |
BROADPEAK |
| GSM1014158_mm9_wgEncodeUwDnaseEpcppmCd1ME14halfPkRep1.narrowPeak.gz |
1.4 Mb |
(ftp)(http) |
NARROWPEAK |
| GSM1014158_mm9_wgEncodeUwDnaseEpcppmCd1ME14halfSigRep1.bigWig |
133.2 Mb |
(ftp)(http) |
BIGWIG |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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