|
Status |
Public on Oct 03, 2012 |
Title |
UW_DnaseSeq_ZhBTc4_E0_129/Ola |
Sample type |
SRA |
|
|
Source name |
ZhBTc4
|
Organism |
Mus musculus |
Characteristics |
lab: UW-m lab description: Stamatoyannopoulous - University of Washington datatype: DnaseSeq datatype description: DNaseI HS Sequencing cell: ZhBTc4 cell organism: mouse cell description: Undifferentiated mouse embryonic stem cells cell sex: M age: E0 age description: Embryonic day 0 (stem cell) strain: 129/Ola strain description: The mice have yellow coats and late onset severe vacuolation in brain (700+ days). Inbred strain used as a control group to compare with null PrP mice. age: E0 age description: Embryonic day 0 (stem cell) labexpid: DS17616 labversion: 1,Hotspot-v5.2,Hotspot-v5.1,lmax-v1.1,WindowDensity-bin20-win+/-75 replicate: 1,2 strain description: The mice have yellow coats and late onset severe vacuolation in brain (700+ days). Inbred strain used as a control group to compare with null PrP mice.
|
Biomaterial provider |
Dr. Levasseur (University of Iowa)
|
Growth protocol |
ZhBTc4_Stam_protocol.pdf
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwDnase
|
|
|
Library strategy |
DNase-Hypersensitivity |
Library source |
genomic |
Library selection |
DNAse |
Instrument model |
Illumina Genome Analyzer |
|
|
Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwDnase
|
|
|
Submission date |
Oct 03, 2012 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL9185 |
Series (3) |
GSE37074 |
DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington |
GSE49847 |
A comparative encyclopedia of DNA elements in the mouse genome |
GSE51336 |
Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution |
|
Relations |
SRA |
SRX191027 |
BioSample |
SAMN01757937 |
Named Annotation |
GSM1014169_mm9_wgEncodeUwDnaseZhbtc4129olaME0SigRep1V2.bigWig |
Named Annotation |
GSM1014169_mm9_wgEncodeUwDnaseZhbtc4129olaME0SigRep2.bigWig |