|
| Status |
Public on Oct 03, 2012 |
| Title |
UW_DnaseSeq_Patski_immortalized_Spretus.BL6-Xist |
| Sample type |
SRA |
| |
|
| Source name |
Patski
|
| Organism |
Mus musculus |
| Characteristics |
lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: Patski
cell organism: mouse
cell description: Mouse Embryonic Kidney Fibroblast. As described in Lingenfelter et al., 1998 (Nat Genet. 1998 18:212-3) and Yang et al., 2010 (Genome Res. 2010 20:614-22), PATSKI is a female interspecific mouse fibroblast that was derived from the embryonic kidney of an M.spretus x C57BL/6J hybrid mouse such that the C57Bl/6J X chromosome (maternal) is always the inactive X. This is an adherent cell line.
cell sex: M
age: immortalized
age description: Immortal cells
strain: Spretus.BL6-Xist
strain description: M.spretus x C57BL/6J hybrid mouse such that the C57Bl/6J X chromosome (maternal) is always the inactive X.
age: immortalized
age description: Immortal cells
labversion: 1,Hotspot-v5.1,lmax-v1.1,WindowDensity-bin20-win+/-75
replicate: 1,2
strain description: M.spretus x C57BL/6J hybrid mouse such that the C57Bl/6J X chromosome (maternal) is always the inactive X.
|
| Biomaterial provider |
Dr. Christine Disteche (University of Washington)
|
| Growth protocol |
Patski_Stam_protocol.pdf
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwDnase
|
| |
|
| Library strategy |
DNase-Hypersensitivity |
| Library source |
genomic |
| Library selection |
DNAse |
| Instrument model |
Illumina Genome Analyzer |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwDnase
|
| |
|
| Submission date |
Oct 03, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL9185 |
| Series (3) |
| GSE37074 |
DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington |
| GSE49847 |
A comparative encyclopedia of DNA elements in the mouse genome |
| GSE51336 |
Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution |
|
| Relations |
| SRA |
SRX191029 |
| BioSample |
SAMN01757939 |
| Named Annotation |
GSM1014171_mm9_wgEncodeUwDnasePatskiSpbl6MImmortalSigRep1.bigWig |
| Named Annotation |
GSM1014171_mm9_wgEncodeUwDnasePatskiSpbl6MImmortalSigRep2.bigWig |
