|
Status |
Public on Oct 03, 2012 |
Title |
UW_DnaseSeq_NIH-3T3_immortalized_NIH/Swiss |
Sample type |
SRA |
|
|
Source name |
NIH-3T3
|
Organism |
Mus musculus |
Characteristics |
lab: UW-m lab description: Stamatoyannopoulous - University of Washington datatype: DnaseSeq datatype description: DNaseI HS Sequencing cell: NIH-3T3 cell organism: mouse cell description: fibroblast cell sex: M age: immortalized age description: Immortal cells strain: NIH/Swiss strain description: An outbred Swiss mouse used as a general-purpose stock. Used extensively for pertussis HSF testing. age: immortalized age description: Immortal cells labexpid: DS16900 labversion: 1,Hotspot-v5.2,Hotspot-v5.1,lmax-v1.1,WindowDensity-bin20-win+/-75 replicate: 1,2 strain description: An outbred Swiss mouse used as a general-purpose stock. Used extensively for pertussis HSF testing.
|
Biomaterial provider |
ATCC
|
Growth protocol |
NIH-3T3_Stam_protocol.pdf
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwDnase
|
|
|
Library strategy |
DNase-Hypersensitivity |
Library source |
genomic |
Library selection |
DNAse |
Instrument model |
Illumina Genome Analyzer |
|
|
Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwDnase
|
|
|
Submission date |
Oct 03, 2012 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL9185 |
Series (4)
|
GSE37074 |
DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington |
GSE49847 |
A comparative encyclopedia of DNA elements in the mouse genome |
GSE51334 |
DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions |
GSE51336 |
Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution |
|
Relations |
SRA |
SRX191035 |
BioSample |
SAMN01757945 |
Named Annotation |
GSM1014177_mm9_wgEncodeUwDnaseNih3t3NihsMImmortalSigRep1.bigWig |
Named Annotation |
GSM1014177_mm9_wgEncodeUwDnaseNih3t3NihsMImmortalSigRep2.bigWig |