|
| Status |
Public on Oct 03, 2012 |
| Title |
UW_DnaseSeq_T-Naive_adult-8wks_C57BL/6 |
| Sample type |
SRA |
| |
|
| Source name |
T-Naive
|
| Organism |
Mus musculus |
| Characteristics |
lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: T-Naive
cell organism: mouse
cell description: Naive T cells: CD4+, CD25-
cell sex: M
age: adult-8wks
age description: Adult 8 weeks
strain: C57BL/6
strain description: C57 black 6, the most common inbred strain of laboratory mouse
age: adult-8wks
age description: Adult 8 weeks
labexpid: DS17082,DS17080
labversion: Hotspot-v5.2,Hotspot-v5.1,1,lmax-v1.1,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate: 1,3,2,4
strain description: C57 black 6, the most common inbred strain of laboratory mouse
|
| Biomaterial provider |
Stam lab
|
| Growth protocol |
Tissue_Stam_protocol.pdf
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwDnase
|
| |
|
| Library strategy |
DNase-Hypersensitivity |
| Library source |
genomic |
| Library selection |
DNAse |
| Instrument model |
Illumina Genome Analyzer |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwDnase
|
| |
|
| Submission date |
Oct 03, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL9185 |
| Series (3) |
| GSE37074 |
DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington |
| GSE49847 |
A comparative encyclopedia of DNA elements in the mouse genome |
| GSE51336 |
Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution |
|
| Relations |
| SRA |
SRX191050 |
| BioSample |
SAMN01757960 |
| Named Annotation |
GSM1014192_mm9_wgEncodeUwDnaseTnaiveC57bl6MAdult8wksSigRep1.bigWig |
| Named Annotation |
GSM1014192_mm9_wgEncodeUwDnaseTnaiveC57bl6MAdult8wksSigRep2.bigWig |
| Named Annotation |
GSM1014192_mm9_wgEncodeUwDnaseTnaiveC57bl6MAdult8wksSigRep3.bigWig |
| Named Annotation |
GSM1014192_mm9_wgEncodeUwDnaseTnaiveC57bl6MAdult8wksSigRep4.bigWig |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM1014192_mm9_wgEncodeUwDnaseTnaiveC57bl6MAdult8wksHotspotsRep1.broadPeak.gz |
2.7 Mb |
(ftp)(http) |
BROADPEAK |
| GSM1014192_mm9_wgEncodeUwDnaseTnaiveC57bl6MAdult8wksHotspotsRep2.broadPeak.gz |
1.7 Mb |
(ftp)(http) |
BROADPEAK |
| GSM1014192_mm9_wgEncodeUwDnaseTnaiveC57bl6MAdult8wksHotspotsRep3.broadPeak.gz |
2.0 Mb |
(ftp)(http) |
BROADPEAK |
| GSM1014192_mm9_wgEncodeUwDnaseTnaiveC57bl6MAdult8wksHotspotsRep4.broadPeak.gz |
2.3 Mb |
(ftp)(http) |
BROADPEAK |
| GSM1014192_mm9_wgEncodeUwDnaseTnaiveC57bl6MAdult8wksPkRep1.narrowPeak.gz |
1.2 Mb |
(ftp)(http) |
NARROWPEAK |
| GSM1014192_mm9_wgEncodeUwDnaseTnaiveC57bl6MAdult8wksPkRep2.narrowPeak.gz |
935.9 Kb |
(ftp)(http) |
NARROWPEAK |
| GSM1014192_mm9_wgEncodeUwDnaseTnaiveC57bl6MAdult8wksPkRep3.narrowPeak.gz |
1.0 Mb |
(ftp)(http) |
NARROWPEAK |
| GSM1014192_mm9_wgEncodeUwDnaseTnaiveC57bl6MAdult8wksPkRep4.narrowPeak.gz |
1.1 Mb |
(ftp)(http) |
NARROWPEAK |
| GSM1014192_mm9_wgEncodeUwDnaseTnaiveC57bl6MAdult8wksSigRep1.bigWig |
161.7 Mb |
(ftp)(http) |
BIGWIG |
| GSM1014192_mm9_wgEncodeUwDnaseTnaiveC57bl6MAdult8wksSigRep2.bigWig |
164.8 Mb |
(ftp)(http) |
BIGWIG |
| GSM1014192_mm9_wgEncodeUwDnaseTnaiveC57bl6MAdult8wksSigRep3.bigWig |
135.2 Mb |
(ftp)(http) |
BIGWIG |
| GSM1014192_mm9_wgEncodeUwDnaseTnaiveC57bl6MAdult8wksSigRep4.bigWig |
139.8 Mb |
(ftp)(http) |
BIGWIG |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
