|
Status |
Public on Oct 03, 2012 |
Title |
UW_DnaseDgf_NB4 |
Sample type |
SRA |
|
|
Source name |
NB4
|
Organism |
Homo sapiens |
Characteristics |
lab: UW lab description: Stamatoyannopoulous - University of Washington datatype: DnaseDgf datatype description: DNase Digital Footprinting cell: NB4 cell organism: human cell description: acute promyelocytic leukemia cell line. (PMID: 1995093) cell karyotype: cancer cell lineage: mesoderm cell sex: U labexpid: DS12543 labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
|
Biomaterial provider |
Refer to protocol documents for differing sources, UW: DSMZ (Deutsche Sammlung von Mikroorganismen und Zellkulturen) ACC-207 http://www.dsmz.de/ or Yale (Stanford): National Cell Culture Center http://www.nccc.com/
|
Growth protocol |
NB4_Stam_protocol.pdf
|
Extracted molecule |
genomic DNA |
Extraction protocol |
For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDgf
|
|
|
Library strategy |
DNase-Hypersensitivity |
Library source |
genomic |
Library selection |
DNAse |
Instrument model |
Illumina HiSeq 2000 |
|
|
Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDgf
|
|
|
Submission date |
Oct 03, 2012 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL11154 |
Series (1) |
GSE26328 |
DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Human] |
|
Relations |
SRA |
SRX193585 |
BioSample |
SAMN01761093 |
Named Annotation |
GSM1014513_hg19_wgEncodeUwDgfNb4Raw.bigWig |
Named Annotation |
GSM1014513_hg19_wgEncodeUwDgfNb4Sig.bigWig |