|
Status |
Public on Oct 03, 2012 |
Title |
UW_DnaseDgf_Th2_Wb54553204 |
Sample type |
SRA |
|
|
Source name |
Th2_Wb54553204
|
Organism |
Homo sapiens |
Characteristics |
lab: UW lab description: Stamatoyannopoulous - University of Washington datatype: DnaseDgf datatype description: DNase Digital Footprinting cell: Th2_Wb54553204 cell organism: human cell description: Th2 cells in vivo isolation, donor is Caucasian, male 33 year old, primary pheresis of single normal subject cell karyotype: normal cell lineage: mesoderm cell sex: M treatment: None treatment description: No special treatment or protocol applies labexpid: DS17597 labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
|
Biomaterial provider |
John Stamatoyannopoulos
|
Treatment protocol |
None
|
Growth protocol |
AdultCD4naiveTcell_Crawford.v2_PlusStam.v1_SOP.pdf
|
Extracted molecule |
genomic DNA |
Extraction protocol |
For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDgf
|
|
|
Library strategy |
DNase-Hypersensitivity |
Library source |
genomic |
Library selection |
DNAse |
Instrument model |
Illumina HiSeq 2000 |
|
|
Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDgf
|
|
|
Submission date |
Oct 03, 2012 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL11154 |
Series (1) |
GSE26328 |
DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Human] |
|
Relations |
SRA |
SRX193594 |
BioSample |
SAMN01761103 |
Named Annotation |
GSM1014522_hg19_wgEncodeUwDgfTh2wb54553204Raw.bigWig |
Named Annotation |
GSM1014522_hg19_wgEncodeUwDgfTh2wb54553204Sig.bigWig |