GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM1014529
Query DataSets for GSM1014529
Status
Public on Oct 03, 2012
Title
UW_DnaseDgf_HMVEC-LLy
Sample type
SRA
Source name
HMVEC-LLy
Organism
Homo sapiens
Characteristics
lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseDgf
datatype description: DNase Digital Footprinting
cell: HMVEC-LLy
cell organism: human
cell description: lymphatic microvascular endothelial cells, lung-derived
cell karyotype: normal
cell lineage: mesoderm
cell sex: F
labexpid: DS13185
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
Biomaterial provider
Lonza
Growth protocol
HMVEC-LLy_Stam_protocol.pdf
Extracted molecule
genomic DNA
Extraction protocol
For more information, see
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDgf
Library strategy
DNase-Hypersensitivity
Library source
genomic
Library selection
DNAse
Instrument model
Illumina HiSeq 2000
Data processing
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDgf
Submission date
Oct 03, 2012
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL11154
Series (1)
GSE26328
DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Human]
Relations
SRA
SRX193601
BioSample
SAMN01761110
Named Annotation
GSM1014529_hg19_wgEncodeUwDgfHmvecbRaw.bigWig
Named Annotation
GSM1014529_hg19_wgEncodeUwDgfHmvecbSig.bigWig
Supplementary file
Size
Download
File type/resource
GSM1014529_hg19_wgEncodeUwDgfHmvecbHotspots.broadPeak.gz
2.5 Mb
(ftp)
(http)
BROADPEAK
GSM1014529_hg19_wgEncodeUwDgfHmvecbPk.narrowPeak.gz
2.1 Mb
(ftp)
(http)
NARROWPEAK
GSM1014529_hg19_wgEncodeUwDgfHmvecbRaw.bigWig
334.7 Mb
(ftp)
(http)
BIGWIG
GSM1014529_hg19_wgEncodeUwDgfHmvecbSig.bigWig
484.2 Mb
(ftp)
(http)
BIGWIG
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
