|
Status |
Public on Oct 03, 2012 |
Title |
UW_DnaseDgf_RPMI-7951 |
Sample type |
SRA |
|
|
Source name |
RPMI-7951
|
Organism |
Homo sapiens |
Characteristics |
lab: UW lab description: Stamatoyannopoulous - University of Washington datatype: DnaseDgf datatype description: DNase Digital Footprinting cell: RPMI-7951 cell organism: human cell description: Human Skin Malignant Melanoma Cells, This is a hyperdiploid human cell line with the modal chromosome number of 49, occurring in 24% of cells. Polyploid cells occurred at 22%, which is high. cell karyotype: cancer cell lineage: ectoderm cell sex: F labexpid: DS20909 labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
|
Biomaterial provider |
ATCC
|
Growth protocol |
RPMI7951_Stam_protocol.pdf
|
Extracted molecule |
genomic DNA |
Extraction protocol |
For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDgf
|
|
|
Library strategy |
DNase-Hypersensitivity |
Library source |
genomic |
Library selection |
DNAse |
Instrument model |
Illumina HiSeq 2000 |
|
|
Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDgf
|
|
|
Submission date |
Oct 03, 2012 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL11154 |
Series (1) |
GSE26328 |
DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Human] |
|
Relations |
SRA |
SRX193607 |
BioSample |
SAMN01761115 |
Named Annotation |
GSM1014535_hg19_wgEncodeUwDgfRpmi7951Raw.bigWig |
Named Annotation |
GSM1014535_hg19_wgEncodeUwDgfRpmi7951Sig.bigWig |