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GEO help: Mouse over screen elements for information. |
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Status |
Public on Oct 03, 2012 |
Title |
UW_DnaseDgf_M059J |
Sample type |
SRA |
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Source name |
M059J
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Organism |
Homo sapiens |
Characteristics |
lab: UW lab description: Stamatoyannopoulous - University of Washington datatype: DnaseDgf datatype description: DNase Digital Footprinting cell: M059J cell organism: human cell description: malignant glioblastoma, glioma, lack DNA-dependent protein kinase activity, deficient in repair of DNA double strand breaks, the cells are negative for glial fibrillary acidic protein (GFAP), tumor specimen taken from a 33 year old cell karyotype: cancer cell lineage: ectoderm cell sex: M labexpid: DS20493 labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
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Biomaterial provider |
ATCC
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Growth protocol |
M059J_Stam_protocol.pdf
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Extracted molecule |
genomic DNA |
Extraction protocol |
For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDgf
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Library strategy |
DNase-Hypersensitivity |
Library source |
genomic |
Library selection |
DNAse |
Instrument model |
Illumina HiSeq 2000 |
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Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDgf
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Submission date |
Oct 03, 2012 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
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Organization name |
ENCODE DCC
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Street address |
300 Pasteur Dr
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City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
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Platform ID |
GPL11154 |
Series (1) |
GSE26328 |
DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Human] |
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Relations |
SRA |
SRX193610 |
BioSample |
SAMN01761118 |
Named Annotation |
GSM1014538_hg19_wgEncodeUwDgfM059jRaw.bigWig |
Named Annotation |
GSM1014538_hg19_wgEncodeUwDgfM059jSig.bigWig |
Supplementary file |
Size |
Download |
File type/resource |
GSM1014538_hg19_wgEncodeUwDgfM059jHotspots.broadPeak.gz |
4.2 Mb |
(ftp)(http) |
BROADPEAK |
GSM1014538_hg19_wgEncodeUwDgfM059jPk.narrowPeak.gz |
3.3 Mb |
(ftp)(http) |
NARROWPEAK |
GSM1014538_hg19_wgEncodeUwDgfM059jRaw.bigWig |
344.3 Mb |
(ftp)(http) |
BIGWIG |
GSM1014538_hg19_wgEncodeUwDgfM059jSig.bigWig |
598.4 Mb |
(ftp)(http) |
BIGWIG |
SRA Run Selector |
Raw data are available in SRA |
Processed data provided as supplementary file |
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