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Sample GSM1023800 Query DataSets for GSM1023800
Status Public on Oct 17, 2015
Title 30_12w_2
Sample type RNA
 
Source name Peripheral Blood, 12 week
Organism Homo sapiens
Characteristics tissue: whole blood
gender: male
time point: after intake
treatment: Chlorella
Treatment protocol A peripheral blood sample was collected in a PAXgene blood RNA tube (BD, City, NJ, USA), left at room temperature for 2 hours after sufficient mixing, and then stored at −20℃.
Extracted molecule total RNA
Extraction protocol The stored tube was used for total RNA extraction with the PAXgene Blood miRNA Kit (QIAGEN, City, CA, USA). RNA was quantified using a NanoDrop-1000 spectrophotometer and quality was monitored with the Agilent 2100 Bioanalyzer.
Label Cy3
Label protocol Cyanine 3-labeled cRNA was prepared from 100 ng total RNA using the Low Input Quick Amp Labeling Kit according to the manufacturer’s protocol.
 
Hybridization protocol Agilent one-color gene expression hyb/wash protocol.
Scan protocol Microarrays were scanned using a G2505C DNA Microarray Scanner.
Description Gene expression profile in the peripheral blood after Chlorella intake.
Data processing The images were converted to numerical values by Feature Extraction Software ver. 10.7.3.1. Data analysis used GeneSpring GX v11.5 (Agilent Technologies) with which inter-array normalization was done using the 75th percentile.
 
Submission date Oct 23, 2012
Last update date Oct 17, 2015
Contact name Michie Kobayashi
E-mail(s) kobayashi@dna-chip.co.jp
Phone +81-45-500-5211
Organization name DNA Chip Research Inc.
Street address 1-1-43, Suehirocho,
City Tsurumi-ku,
State/province Yokohama
ZIP/Postal code 230-0045
Country Japan
 
Platform ID GPL14550
Series (1)
GSE41767 Chlorella ingestion and suppression of resistin gene expression in borderline diabetics: a randomized, placebo-controlled study

Data table header descriptions
ID_REF
VALUE Data analysis used GeneSpring GX v11.5 (Agilent Technologies) with which inter-array normalization was done using the 75th percentile.

Data table
ID_REF VALUE
GE_BrightCorner 0.34199715
DarkCorner 0.13936806
A_23_P326296 0.046150208
A_24_P287941 0.5674677
A_24_P325046 0.13540578
A_23_P200404 -0.20210743
A_19_P00800513 0.78993607
A_23_P15619 0.005409718
A_33_P3402354 -0.79928684
A_33_P3338798 -0.0230546
A_32_P98683 -0.008311749
A_23_P137543 -0.32459807
A_19_P00803040 0.91494846
A_23_P117852 0.89740825
A_33_P3285585 -0.051193237
A_24_P328231 -0.15367913
A_33_P3415668 0.6051507
A_23_P73609 2.083037
A_24_P186124 -0.2467494
A_23_P369983 -0.117872715

Total number of rows: 42545

Table truncated, full table size 1042 Kbytes.




Supplementary file Size Download File type/resource
GSM1023800_30_12w_2.txt.gz 12.2 Mb (ftp)(http) TXT
Processed data included within Sample table

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