|
Status |
Public on Oct 24, 2012 |
Title |
UW_DnaseSeq_RPMI-7951Rep1 |
Sample type |
SRA |
|
|
Source name |
RPMI-7951
|
Organism |
Homo sapiens |
Characteristics |
lab: UW lab description: Stamatoyannopoulous - University of Washington datatype: DnaseSeq datatype description: DNaseI HS Sequencing cell: RPMI-7951 cell organism: human cell description: Human Skin Malignant Melanoma Cells, This is a hyperdiploid human cell line with the modal chromosome number of 49, occurring in 24% of cells. Polyploid cells occurred at 22%, which is high. cell karyotype: cancer cell lineage: ectoderm cell sex: F treatment: None treatment description: No special treatment or protocol applies labexpid: DS20909 labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75 replicate: 1
|
Biomaterial provider |
ATCC
|
Treatment protocol |
None
|
Growth protocol |
RPMI7951_Stam_protocol.pdf
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
|
|
|
Library strategy |
DNase-Hypersensitivity |
Library source |
genomic |
Library selection |
DNAse |
Instrument model |
Illumina Genome Analyzer |
|
|
Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
|
|
|
Submission date |
Oct 24, 2012 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL9052 |
Series (2) |
GSE29692 |
DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington |
GSE51336 |
Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution |
|
Relations |
Reanalyzed by |
GSE54296 |
SRA |
SRX201289 |
BioSample |
SAMN01780228 |
Named Annotation |
GSM1024779_hg19_wgEncodeUwDnaseRpmi7951RawRep1.bigWig |