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Sample GSM1027302 Query DataSets for GSM1027302
Status Public on Nov 01, 2012
Title Histone H3K9me3 ChIP-Seq of CD56 Primary Cells; Histone.DS22900
Sample type SRA
 
Source name flow sorted CD56+ Cells,year 21; Histone.DS22900
Organism Homo sapiens
Characteristics sample alias: CD56.RO_01721
sample common name: CD56 Primary Cells
molecule: genomic DNA
disease: None
biomaterial_provider: FHCRC HEIMFELD
biomaterial_type: Primary Cell
cell_type: CD56 Primary Cells
markers: CD56+
donor_id: RO 01679
donor_age: year 21
donor_health_status: NA
donor_sex: Male
donor_ethnicity: Caucasian
passage_if_expanded: NA
experiment_type: Histone H3K9me3
extraction_protocol: http://www.roadmapepigenomics.org/protocols/type/experimental
extraction_protocol_type_of_sonicator: Diagenode Bioruptor
extraction_protocol_sonication_cycles: 20-40 cycles of 0.5 minute on and 0.5 minute off
chip_protocol: http://www.roadmapepigenomics.org/protocolstype/experimental
chip_protocol_chromatin_amount: 60ug
chip_protocol_bead_type: Millipore A/G agarose beads
chip_protocol_bead_amount: 30ul A/G bead slurry
chip_protocol_antibody_amount: 3ug
chip_antibody: Histone H3K9me3
chip_antibody_provider: Active Motif
chip_antibody_catalog: 39161
chip_antibody_lot: 13509002
Extracted molecule genomic DNA
Extraction protocol Library construction protocol: Single read - Illumina
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
 
Description sample_term_id: CL_0000623
assay_term_id: OBI_0000716
nucleic_acid_term_id:
Design description: Histone H3K9me3 ChIP-Seq
Library name: Histone.DS22900
EDACC Genboree Experiment Page:
http://genboree.org/java-bin/project.jsp?projectName=XML%20Submissions%2FUniversity%20of%20Washington%2FEXPERIMENT%2FEDACC.14491
EDACC Genboree Sample Page:
http://genboree.org/java-bin/project.jsp?projectName=XML%20Submissions%2FUniversity%20of%20Washington%2FSAMPLE%2FEDACC.5358
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For data usage terms and conditions, please refer to:
http://www.drugabuse.gov/funding/funding-opportunities/nih-common-fund/epigenomics-data-access-policies
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Data processing Various levels of processed data files will be made available as this project proceeds.
 
Submission date Oct 29, 2012
Last update date May 15, 2019
Contact name Northwest REMC
E-mail(s) rharris1@bcm.tmc.edu
Organization name University of Washington
Street address -
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
 
Platform ID GPL11154
Series (1)
GSE18927 University of Washington Human Reference Epigenome Mapping Project
Relations
SRA SRX201789
BioSample SAMN00204018

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
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