|
| Status |
Public on Feb 01, 2013 |
| Title |
Glioma-EORTC26951 A1372_20.CEL |
| Sample type |
RNA |
| |
|
| Source name |
Glioma, clinical trial RT v RT+PCV
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: glioma
sample: 315
igs: 18
tcga classification: C
tissue type: FFPE
idhmut: mut
1p19q loh: no loss
egfr: wt
mgmt: meth
trt: RT/PCV
ss (y): 1.87671232876712
event: deceased
age: 39
Sex: M
original diagnosis: AOD
review diagnosis: GBM/AA
experiment: pt 1
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Trizol
|
| Label |
biotin
|
| Label protocol |
cDNA synthesis and cRNA labeling was done using the alternative protocol for one-cycle cDNA synthesis.Biotin-labeled cRNA was generated using the ENZO Highyield RNA transcript labeling kit (ENZO Life Sciences, Inc., Farmingdale, NY). Affymetrix (Santa Clara, CA)
|
| |
|
| Hybridization protocol |
standard Affymetrix protocol
|
| Scan protocol |
standard Affymetrix protocol
|
| Description |
Abbreviations: IGS: intrinsic glioma subtype; Trt: treatment; SS: survival in years; C: classical; P: proneural; M: mesenchymal; N:neural
|
| Data processing |
RMA
|
| |
|
| Submission date |
Dec 21, 2012 |
| Last update date |
Feb 01, 2013 |
| Contact name |
Pim French |
| E-mail(s) |
p.french@erasmusmc.nl
|
| Phone |
+31 10 70443 33
|
| Organization name |
Erasmus MC
|
| Department |
Neurology
|
| Lab |
Neurooncology
|
| Street address |
Dr Molewaterplein 50
|
| City |
Rotterdam |
| ZIP/Postal code |
2040CA |
| Country |
Netherlands |
| |
|
| Platform ID |
GPL5188 |
| Series (2) |
| GSE43107 |
Intrinsic glioma subtypes in EORTC 26951 (part 1) |
| GSE43388 |
Intrinsic glioma subtypes in EORTC 26951 |
|
