|
| Status |
Public on Jul 29, 2013 |
| Title |
human paternal exome |
| Sample type |
SRA |
| |
|
| Source name |
blood
|
| Organism |
Homo sapiens |
| Characteristics |
cell type: primary blood
exome capture: Agilent 50M kit was used to capture the genome
|
| Growth protocol |
Genomic DNA was obtained from blood of the father for exome sequencing analysis
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Targeted enrichment was performed with Agilent 50M kit
Libraries were prepared using an Illumina paired-end DNA sample prep kit (Illumina) following the manufacturer's protocols
|
| |
|
| Library strategy |
OTHER |
| Library source |
genomic |
| Library selection |
other |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Data processing |
Library strategy: Exome-Seq
Raw reads from the Illumina HiSeq2000 were mapped to the hg19 genome using default parameters in BWA
hg19
exome.wig: wiggle files represent the read depth every 10bp along the hg19 genome
|
| |
|
| Submission date |
Feb 08, 2013 |
| Last update date |
May 15, 2019 |
| Contact name |
Kevin Huang |
| Phone |
310-267-0438
|
| Organization name |
UCLA
|
| Department |
Human Genetics
|
| Lab |
Guoping Fan
|
| Street address |
Gonda BLDG Rm. 6554, P.O.Box 957088
|
| City |
Los Angeles |
| State/province |
CA |
| ZIP/Postal code |
90095-7088 |
| Country |
USA |
| |
|
| Platform ID |
GPL11154 |
| Series (1) |
| GSE44183 |
Genetic Programs in Human and Mouse Early Embryos Revealed by Single-Cell RNA-Sequencing |
|
| Relations |
| SRA |
SRX229801 |
| BioSample |
SAMN01915432 |
