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Sample GSM112808 Query DataSets for GSM112808
Status Public on Sep 06, 2006
Title Neuroblastoma_primary_stage4S_NB2
Sample type SAGE
Anchor NlaIII
Tag Count 28682
Tag Length 10
 
Source name Neuroblastoma, primary tumor, stage 4S
Organism Homo sapiens
Characteristics Tissue: primary neuroblastoma, bulk
Stage: 4S
Age at diagnosis: 52 days
Sex: female
MYCN status: non-amplified
histology (INPC): stroma poor, poorly differentiated
Biomaterial provider University Children's Hospital of Cologne
Treatment protocol None
Growth protocol None
Extracted molecule polyA RNA
Extraction protocol RNA extraction: TRIzol reagent (Invitrogen)
SAGE library construction: I-SAGE kit (Invitrogen)
 
Description SAGE library of a primary stage 4S neuroblastoma without preceding cytotoxic treatment
Data processing SAGE2000 software, version 4.12
 
Submission date Jun 06, 2006
Last update date Nov 19, 2008
Contact name Matthias Fischer
E-mail(s) matthias.fischer@uk-koeln.de
Phone 0492214786816
Fax 0492214784689
Organization name University Children's Hospital
Department Pediatric Oncology
Street address Kerpener Str. 62
City Cologne
ZIP/Postal code 50924
Country Germany
 
Platform ID GPL4
Series (1)
GSE4991 Gene expression of disseminated neuroblastoma

Data table header descriptions
TAG Tag sequence
COUNT Tag count
TPM tags per million

Data table
TAG COUNT TPM
TGGGAAGTGG 498 17362.81
GCATAATAGG 217 7565.72
TAATAAAGGT 167 5822.47
TGCACAGTTA 122 4253.54
ATAATTCTTT 116 4044.35
AATGCTTTGT 95 3312.18
GAAAAATGGT 94 3277.32
ATGTGAAGAG 90 3137.86
TGTGTTGAGA 87 3033.26
CACAAACGGT 81 2824.07
GTGAAACCCC 77 2684.61
CCAGAACAGA 76 2649.75
TACCATCAAT 74 2580.02
GGTGACCACC 73 2545.15
CCACTGCACT 67 2335.96
TCAGATCTTT 65 2266.23
TTGGTCCTCT 65 2266.23
CCTAGCTGGA 63 2196.50
GGGATGGTCA 60 2091.90
GGACCACTGA 58 2022.17

Total number of rows: 13235

Table truncated, full table size 248 Kbytes.




Supplementary data files not provided

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