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Sample GSM112813 Query DataSets for GSM112813
Status Public on Sep 06, 2006
Title Neuroblastoma_primary_stage4_NB12
Sample type SAGE
Anchor NlaIII
Tag Count 27273
Tag Length 10
 
Source name Neuroblastoma, primary tumor, stage 4
Organism Homo sapiens
Characteristics Tissue: primary neuroblastoma, bulk
Stage: 4
Age at diagnosis: 3394 days
Sex: male
MYCN status: non-amplified
histology (Shimada): stroma poor, undifferentiated
Biomaterial provider University Children's Hospital of Cologne
Treatment protocol None
Growth protocol None
Extracted molecule total RNA
 
Description SAGE library of a primary stage 4 neuroblastoma without preceding cytotoxic treatment
Data processing SAGE2000 software, version 4.12
 
Submission date Jun 06, 2006
Last update date Nov 19, 2008
Contact name Matthias Fischer
E-mail(s) matthias.fischer@uk-koeln.de
Phone 0492214786816
Fax 0492214784689
Organization name University Children's Hospital
Department Pediatric Oncology
Street address Kerpener Str. 62
City Cologne
ZIP/Postal code 50924
Country Germany
 
Platform ID GPL4
Series (1)
GSE4991 Gene expression of disseminated neuroblastoma

Data table header descriptions
TAG Tag sequence
COUNT Tag count
TPM tags per million

Data table
TAG COUNT TPM
TCTCCATACC 421 15436.51
GCATAATAGG 339 12429.88
CCCATCGTCC 276 10119.90
GTGAAACCCC 190 6966.60
TAATAAAGGT 170 6233.27
GGGCTGGGGT 166 6086.61
CACCTAATTG 143 5243.28
TTCATACACC 137 5023.28
AGCCCTACAA 123 4509.95
GAAAAATGGT 118 4326.62
TAGGTTGTCT 115 4216.62
GGCAAGCCCC 112 4106.63
GTGAAACCCT 103 3776.63
CCACTGCACT 102 3739.96
CTGGGTTAAT 96 3519.96
CAAGCATCCC 95 3483.30
CTTATGACAA 94 3446.63
CCAGAACAGA 88 3226.63
GAGGGAGTTT 88 3226.63
TGCACGTTTT 86 3153.30

Total number of rows: 12942

Table truncated, full table size 242 Kbytes.




Supplementary data files not provided

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