|
Status |
Public on Jun 04, 2013 |
Title |
Lung 6 days post etoposide rep 2 |
Sample type |
RNA |
|
|
Source name |
Lung 6 days post etoposide rep 2
|
Organism |
Mus musculus |
Characteristics |
strain: FVB nude age: 10 weeks tissue: lung treatment: 35 mg/kg etoposide time point: 6 days post drug treatment
|
Treatment protocol |
Mice were injected iv with a single dose of 10 mg/kg doxorubicin or 35 mg/kg etoposide.
|
Extracted molecule |
total RNA |
Extraction protocol |
Trizol extraction + RNeasy clean-up with DNase treatment (Qiagen)
|
Label |
biotin
|
Label protocol |
Standard Illumina protocol
|
|
|
Hybridization protocol |
Standard Illumina protocol
|
Scan protocol |
Standard Illumina protocol
|
Description |
replicate 2
|
Data processing |
Beadlevel data was processed using the beadarray package, affy model background corrected, log2 transformed and RSN normalized using the lumi package. All packages are available in Bioconductor.
|
|
|
Submission date |
Apr 23, 2013 |
Last update date |
Jun 04, 2013 |
Contact name |
Baoxu Pang |
Organization name |
Stanford University
|
Department |
Genetics
|
Lab |
Michael Snyder
|
Street address |
3165 Porter Drive
|
City |
Palo Alto |
State/province |
CALIFORNIA |
ZIP/Postal code |
94304 |
Country |
USA |
|
|
Platform ID |
GPL6887 |
Series (2) |
GSE33626 |
Tissue selective effects of topoisomerase II inhibitors in vivo |
GSE33634 |
Topoisomerase II inhibitors and histone eviction |
|