|
| Status |
Public on Apr 30, 2014 |
| Title |
P003, Biological rep3 RESTENOSIS (+) |
| Sample type |
RNA |
| |
|
| Source name |
RESTENOSIS (+), with restenosis patient's Blood
|
| Organism |
Homo sapiens |
| Characteristics |
blood: Blood
genotype: Male
age: 50 Years
|
| Treatment protocol |
Coronary Artery Disease (CAD) pataient diagnosed with restenosis - and restenosis + after insertion of stent
|
| Growth protocol |
Patient Blood (res + & res -) was collected and stored in PAXgene tubs
|
| Extracted molecule |
total RNA |
| Extraction protocol |
PAXgene Blood RNA Kit used for extraction of total RNA according to the manufacturer's instructions.
|
| Label |
biotin
|
| Label protocol |
Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
|
| |
|
| Hybridization protocol |
Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Primeview Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
|
| Scan protocol |
GeneChips were scanned using the Hewlett-Packard GeneArray Scanner 3000 7G.
|
| Description |
CAD (Restenosis plus) group: patient having stent and also developed restenosis
|
| Data processing |
The data were analyzed with Expression Console and Gene springGX 12.5 using Affymetrix default analysis settings and RMA as normalization method has been used. The probes of intensities less than the 20.0 percentile in the raw data were excluded from the analysis.
|
| |
|
| Submission date |
May 01, 2013 |
| Last update date |
Apr 30, 2014 |
| Contact name |
Dr. Yashpaul Sharma |
| E-mail(s) |
ypspgi@gmail.com
|
| Phone |
0172-2756513
|
| URL |
http://pgimer.nic.in
|
| Organization name |
PGIMER, Chandigarh
|
| Department |
Dept of Cardiology
|
| Lab |
PGIMER
|
| Street address |
8H-1
|
| City |
Chandigarh |
| State/province |
Chandigarh |
| ZIP/Postal code |
160012 |
| Country |
India |
| |
|
| Platform ID |
GPL15207 |
| Series (1) |
| GSE46560 |
Whole blood gene expression profiling for coronary in-stent restenosis: A Indian pilot case study. |
|
