|
Status |
Public on May 02, 2014 |
Title |
A375 control rep 2 |
Sample type |
RNA |
|
|
Source name |
A375 control
|
Organism |
Homo sapiens |
Characteristics |
cell line: A375 cell type: melanoma
|
Treatment protocol |
Cancer cell lines and lymphocytes were grown in in a CO2 incubator and PST-Dox nanoparticles were administered for 24 hr for the treatement groups and total RNA was isolated using Trizol extration protocols.
|
Growth protocol |
Cancer cell lines were grown in 10 % DMEM and Lymphocytes in 10 % RPMI in a CO2 incubator.
|
Extracted molecule |
total RNA |
Extraction protocol |
Trizol extraction of total RNA was performed according to the manufacturer's instructions.
|
Label |
biotin
|
Label protocol |
Biotinylated cRNA were prepared according to the standard Affymetrix protocol from the total RNA
|
|
|
Hybridization protocol |
Following fragmentation, cRNA were hybridized for 16 hr at 45C on GeneChip Human Whole Genome Array.
|
Scan protocol |
Scanning were performed per recommended specifications
|
Description |
Gene expression profiling of Human melanoma cancer cell line
|
Data processing |
Raw data obtained in .cel format were analyzed using GeneSpring GX v 12.0. RMA method was used for probe summarization and normalization was done to median of tissue specific samples.
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|
|
Submission date |
May 02, 2013 |
Last update date |
May 02, 2014 |
Contact name |
madavan vasudevan |
E-mail(s) |
madavan.vasudevan@gmail.com
|
Phone |
+91-9845093355
|
Organization name |
Theomics International Private Limited
|
Street address |
Kasturi Nagar
|
City |
Bangalore |
State/province |
Karnataka |
ZIP/Postal code |
560043 |
Country |
India |
|
|
Platform ID |
GPL15207 |
Series (1) |
GSE46570 |
Gene expression analysis of PST-Dox nanoparticles on isolated normal lymphocytes and in cancer cell lines |
|