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Status |
Public on Jun 12, 2013 |
Title |
hFib_fibB |
Sample type |
SRA |
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Source name |
fibroblast B
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Organism |
Homo sapiens |
Characteristics |
individual: Individual B cell type: fibroblast
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Extracted molecule |
genomic DNA |
Extraction protocol |
Please see Gu et al., 2011 and Smith et al., 2012 RRBS was performed according to a previously published protocol (Smith et al., 2009) with some optimizations for small cell numbers (Gu et al., 2010)
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Library strategy |
Bisulfite-Seq |
Library source |
genomic |
Library selection |
Reduced Representation |
Instrument model |
Illumina HiSeq 2000 |
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Data processing |
Alignment: Sequence reads were obtained and mapped to the mouse genome (mm9) using MAQ bisulfite alignment mode. Aligned bam files were processed using custom software (PMID:20852634). Genome_build: hg19 Supplementary_files_format_and_content: RRBS.bed: chrom, chromstart, chromend,'number methylated cytosines/number total cytosines',score,strand
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Submission date |
May 20, 2013 |
Last update date |
May 15, 2019 |
Contact name |
Rahul Karnik |
E-mail(s) |
rahul@genebrew.com
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Organization name |
None
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Street address |
419 Broadway
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City |
Cambridge |
State/province |
MA |
ZIP/Postal code |
02138 |
Country |
USA |
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Platform ID |
GPL11154 |
Series (1) |
GSE47088 |
Identification of novel imprinted differentially methylated regions by global analysis of human parthenogenetic induced pluripotent stem cells |
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Relations |
BioSample |
SAMN02147040 |
SRA |
SRX283418 |
Supplementary file |
Size |
Download |
File type/resource |
GSM1144603_RRBS_cpgMethylation_hFib_fibB.RRBS.bed.gz |
19.2 Mb |
(ftp)(http) |
BED |
SRA Run Selector |
Raw data are available in SRA |
Processed data provided as supplementary file |
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