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| Status |
Public on Jun 12, 2013 |
| Title |
hiPS_B41 |
| Sample type |
SRA |
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| Source name |
hiPS B41
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| Organism |
Homo sapiens |
| Characteristics |
individual: Individual B
cell type: PgiPSC
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| Extracted molecule |
genomic DNA |
| Extraction protocol |
Please see Gu et al., 2011 and Smith et al., 2012
RRBS was performed according to a previously published protocol (Smith et al., 2009) with some optimizations for small cell numbers (Gu et al., 2010)
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| Library strategy |
Bisulfite-Seq |
| Library source |
genomic |
| Library selection |
Reduced Representation |
| Instrument model |
Illumina HiSeq 2000 |
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| Data processing |
Alignment: Sequence reads were obtained and mapped to the mouse genome (mm9) using MAQ bisulfite alignment mode.
Aligned bam files were processed using custom software (PMID:20852634).
Genome_build: hg19
Supplementary_files_format_and_content: RRBS.bed: chrom, chromstart, chromend,'number methylated cytosines/number total cytosines',score,strand
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| Submission date |
May 20, 2013 |
| Last update date |
May 15, 2019 |
| Contact name |
Rahul Karnik |
| E-mail(s) |
rahul@genebrew.com
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| Organization name |
None
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| Street address |
419 Broadway
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| City |
Cambridge |
| State/province |
MA |
| ZIP/Postal code |
02138 |
| Country |
USA |
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| Platform ID |
GPL11154 |
| Series (1) |
| GSE47088 |
Identification of novel imprinted differentially methylated regions by global analysis of human parthenogenetic induced pluripotent stem cells |
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| Relations |
| BioSample |
SAMN02147046 |
| SRA |
SRX283424 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM1144609_RRBS_cpgMethylation_hiPS_B41.RRBS.bed.gz |
17.7 Mb |
(ftp)(http) |
BED |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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