|
| Status |
Public on May 31, 2013 |
| Title |
Neural progenitor cells (control 2) |
| Sample type |
SRA |
| |
|
| Source name |
Sub-ventricular zone (brain)
|
| Organism |
Mus musculus |
| Characteristics |
strain: FVB
cell type: Sub ventricular-zone derived neural stem cells
genotype: Ink4a/Arf -/-;BMI1 dox-inducible shRNA
|
| Extracted molecule |
total RNA |
| Extraction protocol |
PCR amplification
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina Genome Analyzer IIx |
| |
|
| Description |
DOX_FPKM
|
| Data processing |
FPKM from tag density files and genomeCoverageBed
Genome_build: Ensembl and RefSeq genes
Supplementary_files_format_and_content: FPKM
|
| |
|
| Submission date |
May 30, 2013 |
| Last update date |
May 15, 2019 |
| Contact name |
Gaetano Gargiulo |
| E-mail(s) |
gaetano.gargiulo@mdc-berlin.de
|
| Organization name |
Max Delbrüch Center
|
| Department |
Molecular Oncology
|
| Street address |
Robert-Rössle-Straße 10
|
| City |
Berlin |
| ZIP/Postal code |
13125 |
| Country |
Germany |
| |
|
| Platform ID |
GPL11002 |
| Series (1) |
| GSE33912 |
Functional Identification of Critical Bmi1 target genes in Neural Progenitor and Malignant Glioma cells |
|
| Relations |
| BioSample |
SAMN02183340 |
| SRA |
SRX287548 |
