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Sample GSM1158841 Query DataSets for GSM1158841
Status Public on Aug 08, 2014
Title SEQC_LIF_SQW_D_3_L05_AAGAGGAAAA_FC1_23311016_20120217
Sample type SRA
 
Source name Mix of Sample A (UHRR) and Sample B (HBRR) (1:3)
Organism Homo sapiens
Characteristics seqc sample: D
platform: AB 5500 Genetic Analyzer
site: SQW
library id: 3
lane: L05
barcode: AAGAGGAAAA
flowcell: FC1
Extracted molecule total RNA
Extraction protocol Illumina, SOLiD, and 454 libraries were prepared using standard Illumina, SOLiD, and 454 RNA-Seq protocols respectively.
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model AB 5500 Genetic Analyzer
 
Data processing Illumina Casava1.8 software used for Illumina basecalling. SOLiD 5500 and 454 reads were generated with SOLiD and Roche squencers respectively.
Reads were aligned with Magic, Tophat2, SubRead, Cstar, Novoalign and NovoalignCS
Genome_build: hg19
Supplementary_files_format_and_content: tab-delimited text files include raw counts for the samples from one sequencing site
 
Submission date Jun 10, 2013
Last update date May 15, 2019
Contact name Leming Shi
E-mail(s) lemingshi@fudan.edu.cn
Phone +86-18616827008
Organization name Fudan University
Department School of Life Sciences
Lab Center for Pharmacogenomics
Street address 2005 Songhu Road
City Shanghai
ZIP/Postal code 200438
Country China
 
Platform ID GPL16558
Series (2)
GSE47774 A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequence Quality Control consortium
GSE47792 SEQC Project
Relations
SRA SRX304174
BioSample SAMN02200864

Supplementary data files not provided
SRA Run SelectorHelp
Processed data are available on Series record
Raw data are available in SRA

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