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Sample GSM1202466 Query DataSets for GSM1202466
Status Public on Nov 06, 2013
Title 05H183
Sample type SRA
 
Source name acute lymphoblastic leukemia
Organism Homo sapiens
Characteristics tissue: blood
Extracted molecule total RNA
Extraction protocol TriZol + RNeasy mini Kit (Qiagen, #74106)
TruSeq RNA Sample Preparation (Illumina)
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2000
 
Data processing Basecalls performed using CASAVA 1.8
Sequenced reads were mapped to the reference genome using CASAVA 1.8
Reads Per Kilobase of exon per Megabase of library size (RPKM) were calculated using CASAVA 1.8
Genome_build: hg19
Supplementary_files_format_and_content: Tab-delimited text files include RPKM values for each sample. Columns are: Chromosome, Start location, Stop location, Gene, RPKM, base count.
 
Submission date Aug 06, 2013
Last update date May 15, 2019
Contact name Guy Sauvageau
Organization name Institute for Research in Immunology and Cancer
Street address 2950, Chemin de Polytechnique
City Montreal
State/province QC
ZIP/Postal code H3T 1J4
Country Canada
 
Platform ID GPL11154
Series (2)
GSE48173 Leucegene
GSE49601 Leucegene: ALL sequencing
Relations
Reanalyzed by GSE122515
BioSample SAMN02303570
SRA SRX332164

Supplementary file Size Download File type/resource
GSM1202466_05H183_RPKM.txt.gz 426.7 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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