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Sample GSM1203340 Query DataSets for GSM1203340
Status Public on Nov 06, 2013
Title 11H046
Sample type SRA
 
Source name acute myeloid leukemia
Organism Homo sapiens
Characteristics tissue: blood
Extracted molecule total RNA
Extraction protocol TriZol + RNeasy mini Kit (Qiagen, #74106)
TruSeq RNA Sample Preparation (Illumina)
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2000
 
Data processing Basecalls performed using CASAVA 1.8
Sequenced reads were mapped to the reference genome using CASAVA 1.8
Reads Per Kilobase of exon per Megabase of library size (RPKM) were calculated using CASAVA 1.8
Genome_build: hg19
Supplementary_files_format_and_content: Tab-delimited text files include RPKM values for each sample. Columns are: Chromosome, Start location, Stop location, Gene, RPKM, base count.
 
Submission date Aug 08, 2013
Last update date May 10, 2023
Contact name Guy Sauvageau
Organization name Institute for Research in Immunology and Cancer
Street address 2950, Chemin de Polytechnique
City Montreal
State/province QC
ZIP/Postal code H3T 1J4
Country Canada
 
Platform ID GPL11154
Series (3)
GSE48173 Leucegene
GSE49642 Leucegene: AML sequencing (part 1)
GSE67040 Leucegene: AML sequencing
Relations
Reanalyzed by GSE122515
BioSample SAMN02313861
SRA SRX332660

Supplementary file Size Download File type/resource
GSM1203340_11H046_RPKM.txt.gz 417.6 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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