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Sample GSM1224541 Query DataSets for GSM1224541
Status Public on Sep 06, 2013
Title GD2
Sample type RNA
 
Source name Human epididymal epithelial cells
Organism Homo sapiens
Characteristics developmental stage: immature
tissue: epididymis
cell type: epithelia
Treatment protocol No treatment.
Growth protocol Growth conditions as described in Harris, A., and Coleman, L. (1989) Ductal epithelial cells cultured from human fetal epididymis and vas deferens: relevance to sterility in Cystic Fibrosis. J.Cell Sci., 92: 687-690.
Extracted molecule total RNA
Extraction protocol RNA was isolated by Trizol extraction from the same three primary cultures of HEE (Human Epididymis Epithelial) cells that were used for DNase-seq and at the same timepoint. Total RNA was purified by Millipore Microcon YM-100 filter centrifugation.
Label Cy3
Label protocol Labeling was performed by MOGene, LC, St. Louis, MO, USA following their standard operating protocol. See www.mogene.com.
 
Hybridization protocol Hybridization was performed by MOGene, LC, St. Louis, MO, USA following their standard operating protocol. See www.mogene.com.
Scan protocol Scanning was performed by MOGene, LC, St. Louis, MO, USA following their standard operating protocol. See www.mogene.com.
Description Expression values for human genes in HEE cells
Data processing Data were processed by MOGene, LC, St. Louis, MO, USA following their standard operating protocol. See www.mogene.com.
 
Submission date Sep 05, 2013
Last update date Sep 06, 2013
Contact name Ann Harris
Organization name Case Western Reserve University Medical School
Street address 10900 Euclid Avenue
City Cleveland
State/province OH
ZIP/Postal code 44106
Country USA
 
Platform ID GPL8971
Series (2)
GSE50605 A genome-wide analysis of open chromatin in human epididymis epithelial cells reveals novel candidate regulatory elements for male infertility [Transcriptome data]
GSE51003 A genome-wide analysis of open chromatin in human epididymis epithelial cells reveals novel candidate regulatory elements for male infertility

Data table header descriptions
ID_REF
VALUE RMA-normalized, averaged gene-level signal intensity, log2 transformed

Data table
ID_REF VALUE
NM_000014 7.67456
NM_000015 5.72025
NM_000016 12.56155
NM_000017 12.391
NM_000018 14.54397
NM_000019 12.27014
NM_000020 9.62863
NM_000021 12.81404
NM_000022 10.34586
NM_000023 6.72369
NM_000024 8.19145
NM_000025 4.56298
NM_000026 12.8208
NM_000027 10.29288
NM_000028 10.32825
NM_000029 5.83044
NM_000030 7.5376
NM_000031 12.36151
NM_000032 7.52194
NM_000033 12.51201

Total number of rows: 24000

Table truncated, full table size 438 Kbytes.




Supplementary file Size Download File type/resource
GSM1224541_418857_Cycle2.pair.gz 1.5 Mb (ftp)(http) PAIR
Processed data included within Sample table

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