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Sample GSM1251737 Query DataSets for GSM1251737
Status Public on Nov 12, 2013
Title GREYHOUND_BI_89973_ALVAREZ_AKC4
Sample type genomic
 
Source name blood
Organism Canis lupus familiaris
Characteristics breed: greyhound
gender: male
tissue: blood
disease state: unknown
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from whole blood (QIAamp DNA Midi kit).
Label biotin
Label protocol Standard Illumina protocol for Infinium HD Beadchip
 
Hybridization protocol Standard Illumina protocol for Infinium HD Beadchip
Scan protocol Illumina iScan with Dual-Scanner Autoloader
Description Genomic DNA extracted from blood was genotyped using the Illumina CanineHD Genotyping BeadChip
Data processing Illumina GenomeStudio Version 2011.1 with Genotyping Module 1.9.4
 
Submission date Oct 25, 2013
Last update date Nov 12, 2013
Contact name Elinor Karlsson
E-mail(s) elinor@broadinstitute.org
Organization name Broad Institute
Street address 7 Cambridge Center
City Cambridge
State/province MA
ZIP/Postal code 02142
Country USA
 
Platform ID GPL17481
Series (2)
GSE51734 Dataset #3 for genome-wide analysis of heritable dog osteosarcoma in 3 breeds
GSE52147 Genome-wide analysis of heritable dog osteosarcoma in 3 breeds

Data table header descriptions
ID_REF
VALUE Genotype: AA,AB,BB,or NC (no call)
GC_SCORE
Theta
R
B_Allele_Freq
Log_R_Ratio

Data table
ID_REF VALUE GC_SCORE Theta R B_Allele_Freq Log_R_Ratio
BICF2P1213242 AA 0.2360152 0.002583607 1.139062 0.00 -0.1869128
BICF2G630644947 NC 0.00 0.002658647 1.620329 0.2239516 -0.3428136
BICF2P1228094 NC 0.05164309 0.5057937 1.224613 1 -0.2257732
BICF2G630821330 NC 0.00 0.7421339 1.596224 1 -0.1555457
TIGRP2P74583_rs8569418 NC 0.06022726 0.4679942 1.8634 0.00 0.1965472
BICF2G630827047 NC 0.00 0.7314912 1.529473 1 0.2404619
BICF2S2335357 NC 0.05001866 0.5761105 1.455346 1 -0.5130199
BICF2G630126610 NC 0.00 0.5136746 0.597978 0.8950031 0.006652749
BICF2S23011640 NC 0.00 0.9918743 1.091963 1 -0.02618599
BICF2P781699 NC 0.00 0.9948293 0.8091388 1 -0.09959998
BICF2G630645264 NC 0.00 0.2765488 2.300406 0.9574717 0.08460551
BICF2P1518047 NC 0.1348202 0.3838825 0.9364795 0.03637734 0.06216821
BICF2G630637616 NC 0.0703027 0.4802588 1.054122 0.9806498 0.04933225
BICF2G630826442 NC 0.07963114 0.6560919 1.659609 1 0.07559732
BICF2G630285396 NC 0.07301015 0.4874159 1.916405 1 -0.002577828
BICF2P1141977 NC 0.00 0.9824098 0.762598 1 -0.1176852
BICF2G63058397 NC 0.00 0.3799562 2.069474 0.8511309 0.2427453
BICF2G630825061 NC 0.00 0.5577383 2.421003 1 -0.03195166
BICF2G630593760 NC 0.00 0.3688149 1.370851 1 -0.07243541
BICF2P1388119 NC 0.1263503 0.6649276 2.17676 1 0.2621822

Total number of rows: 173662

Table truncated, full table size 11064 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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